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AT1G79380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ca(2)-dependent phospholipid-binding protein (Copine) family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ca(2)-dependent phospholipid-binding protein (Copine) family; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Copine (InterPro:IPR010734), von Willebrand factor, type A (InterPro:IPR002035); BEST Arabidopsis thaliana protein match is: RING domain ligase2 (TAIR:AT5G14420.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XPC8eggNOG:KOG1327EMBL:AC007202EMBL:AF372928EMBL:AY133585EMBL:CP002684EnsemblPlants:AT1G79380
EnsemblPlants:AT1G79380.1entrez:844276Gene3D:3.30.40.10GeneID:844276GO:GO:0004842GO:GO:0008270GO:GO:0009611
GO:GO:0009867GO:GO:0016567GO:GO:0016874GO:GO:0042742Gramene:AT1G79380.1hmmpanther:PTHR10857hmmpanther:PTHR10857:SF47
HOGENOM:HOG000005800InterPro:IPR001841InterPro:IPR002035InterPro:IPR010734InterPro:IPR013083KEGG:ath:AT1G79380KO:K16280
OMA:LACYKRIPfam:PF07002Pfam:PF13920Pfscan:PS50089PhylomeDB:Q9SAL0PIR:G96824PROSITE:PS50089
Proteomes:UP000006548RefSeq:NP_565206.1SMART:SM00184SMART:SM00327STRING:3702.AT1G79380.1SUPFAM:SSF53300SUPFAM:SSF57850
TAIR:AT1G79380UniGene:At.48394UniGene:At.70225UniProt:Q9SAL0
Coordinates (TAIR10) chr1:+:29860812..29863023
Molecular Weight (calculated) 43732.70 Da
IEP (calculated) 5.47
GRAVY (calculated) -0.32
Length 401 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMGNFLKRF GSGKSRSSRN MTLGTTSSQS HEPSPSDPSL SLADNTNATK KKYALIPDRF SSLDQVSKAL REAGLESSNL ILGVDFTKSN EWTGKTSFDG
101: KCLHALGETS NPYEKAIFVI GQTLAPFDED NLIPCFGFGD STTHDEEVFG FHSDNSPCHG FEEVLACYKR IAPNLRLSGP TSYGPLIDAA VDIVEKNNGQ
201: FHVLVIVADG QVTRGTDMAE GELSQQEKTT IDAIVNASSY ALSIVLVGVG DGPWEDMRKF DDKIPKREFD NFQFVNFTEI MTRNSPESAK ETAFALAALM
301: EIPFQYQAAI ELRLLGKQTG LAKTIVPRPP PIPYTPPTNA ELPSTASPAS PEQTQSCPIC LTNRKDVAFS CGHMTCGDCG SKISNCPICR VRITNRLKLY
401: T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)