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AT1G79270.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : evolutionarily conserved C-terminal region 8
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
evolutionarily conserved C-terminal region 8 (ECT8); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 6 (TAIR:AT3G17330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410YABQeggNOG:KOG1901EMBL:AF326910EMBL:AY113874EMBL:CP002684EnsemblPlants:AT1G79270EnsemblPlants:AT1G79270.1
entrez:844267GeneID:844267GO:GO:0003723Gramene:AT1G79270.1hmmpanther:PTHR12357hmmpanther:PTHR12357:SF15IntAct:Q9FPE7
InterPro:IPR007275KEGG:ath:AT1G79270OMA:YETLETYPfam:PF04146Pfscan:PS50882PhylomeDB:Q9FPE7PROSITE:PS50882
Proteomes:UP000006548RefSeq:NP_565205.1SMR:Q9FPE7STRING:3702.AT1G79270.1TAIR:AT1G79270tair10-symbols:ECT8UniGene:At.25521
UniGene:At.48393UniProt:Q9FPE7
Coordinates (TAIR10) chr1:+:29816157..29818811
Molecular Weight (calculated) 59552.40 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.80
Length 528 amino acids
Sequence (TAIR10)
(BLAST)
001: MTSHVPKHPR KSFEDMVKNL KVDPLAKVTA STTSMVSAKE NKNQSEAEPS YYETLETYQG LPCPYGGYYG YYYPGLDGSV GEAKDNGYYG YGTEVQYPVM
101: QGENGSVIYL MPGFQSYDAS QTYMPINPVG VSSQALHSPM YAAQGYYQNQ FGYADVSSPT YLWDPVGDRY VYGVASYTPP LKQNISSSSH NHNNYYSKSK
201: NSFTGHGMGD RPKTPRKASQ NSYAPPPLLN QEKGRIAYPM DPVKKKSGAL NRDETEKAKA RTKENGTSMN DLANGQDHIT NGECESCSLD AEGNERSNGV
301: GSVIRRDQYN LPSFQTKYEE AIFFVIKSYS EDDIHKSIKY NVWSSTLNGN KKLDSAYQES QKKAADKSGK CPVFLFFSVN ASGQFCGVAE MIGRVDYEKS
401: MEFWQQDKWT GYFPVKWHII KDVPNPQLRH IILENNENKP VTNSRDTQEV RLPQGNEVLN IFKNYAAKTS ILDDFDFYEN REKVMVQKKL RFPPVLKKKE
501: EDLVADFKTM EMSNTVEEGN TELTGTVS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)