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AT1G79200.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J0DIeggNOG:ENOG4111Z86EMBL:AK118564EMBL:BT003682EMBL:CP002684EnsemblPlants:AT1G79200EnsemblPlants:AT1G79200.1
entrez:844261GeneID:844261GO:GO:0005634GO:GO:0048467Gramene:AT1G79200.1hmmpanther:PTHR34117hmmpanther:PTHR34117:SF1
HOGENOM:HOG000238819KEGG:ath:AT1G79200OMA:YYEGITSPhylomeDB:Q8GWY0Proteomes:UP000006548RefSeq:NP_565201.1STRING:3702.AT1G79200.1
TAIR:AT1G79200UniGene:At.34155UniProt:Q8GWY0
Coordinates (TAIR10) chr1:+:29794404..29795711
Molecular Weight (calculated) 19088.20 Da
IEP (calculated) 10.69
GRAVY (calculated) -1.82
Length 159 amino acids
Sequence (TAIR10)
(BLAST)
001: MVSERSSKEK KRSRARSEDS SSSDYEEKVK RHRGTEKDDE RRSRRSDKKD KKSHKHHKSS TSKKSKDDKP KKKHTESDHK LKEGIPELSM EDYFSKNNEF
101: ATWLKEEKRT YFNDLTTEAA RGLFSRFVKR WNRGKLESRY YEGISTAPRT AHDWMIKRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)