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AT1G79110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc ion binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc ion binding; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: SBP (S-ribonuclease binding protein) family protein (TAIR:AT3G12920.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:29471EC:6.3.2.-eggNOG:ENOG4111S1XeggNOG:KOG1100EMBL:AC002986EMBL:AK229952EMBL:AK230039
EMBL:AK230118EMBL:AY087533EMBL:CP002684EnsemblPlants:AT1G79110EnsemblPlants:AT1G79110.1EnsemblPlants:AT1G79110.2entrez:844252
ExpressionAtlas:F4IDI6GeneID:844252Genevisible:F4IDI6GO:GO:0006952GO:GO:0008270GO:GO:0016874GO:GO:0043067
GO:GO:0043161hmmpanther:PTHR10044HOGENOM:HOG000090929InParanoid:F4IDI6InterPro:IPR001841KEGG:ath:AT1G79110KO:K19042
OMA:PICRSPKPaxDb:F4IDI6Pfam:F4IDI6Pfam:PF13920Pfscan:PS50089PIR:T01044PRIDE:F4IDI6
PRO:PR:F4IDI6PROSITE:PS50089ProteinModelPortal:F4IDI6Proteomes:UP000006548RefSeq:NP_565200.1RefSeq:NP_974174.1SMR:F4IDI6
STRING:3702.AT1G79110.1TAIR:AT1G79110UniGene:At.34179UniPathway:UPA00144UniProt:F4IDI6
Coordinates (TAIR10) chr1:+:29759345..29760586
Molecular Weight (calculated) 40087.20 Da
IEP (calculated) 7.16
GRAVY (calculated) -0.64
Length 358 amino acids
Sequence (TAIR10)
(BLAST)
001: MAVDAHHLFL SPPQLFSNRE LTMNNNTMEP TSGGFCNNNQ TGYGVVSPFS VPNHTSTTTT ATPPLLHVYG GSDTIPTTAG YYADGATNLD CEFFPLPTRK
101: RSRDSSRSNY HHLLLQNPRS SSCVNAATTT TTTTLFSFLG QDIDISSHMN QQQHEIDRFV SLHLYQMERV KYEIEEKRKR QARTIMEAIE QGLVKRLRVK
201: EEERERIGKV NHALEERVKS LSIENQIWRD LAQTNEATAN HLRTNLEHVL AQVKDVSRGA GLEKNMNEED DAESCCGSSC GGGGEETVRR RVGLEREAQD
301: KAERRRRRMC RNCGEEESCV LLLPCRHLCL CGVCGSSVHT CPICTSPKNA SVHVNMSS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)