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AT1G79040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : photosystem II subunit R
Curator
Summary (TAIR10)
Encodes for the 10 kDa PsbR subunit of photosystem II (PSII). This subunit appears to be involved in the stable assembly of PSII, particularly that of the oxygen-evolving complex subunit PsbP. Mutants defective in this gene have reduced amounts of subunits PsbP and PsbQ in PSII. In turn, assembly of PsbR is dependent on the presence of PsbJ.
Computational
Description (TAIR10)
photosystem II subunit R (PSBR); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: photosystem II oxygen evolving complex assembly, photosynthesis, response to light intensity; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, photosystem II; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II protein PsbR (InterPro:IPR006814); Has 134 Blast hits to 134 proteins in 52 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 129; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT1G79040-MONOMERBioGrid:29464eggNOG:ENOG410IX24eggNOG:ENOG4112AV0EMBL:AC002986EMBL:AY070103EMBL:AY084512
EMBL:AY096544EMBL:CP002684EMBL:X55970EMBL:Z17592EMBL:Z17693EnsemblPlants:AT1G79040EnsemblPlants:AT1G79040.1
entrez:844245ExpressionAtlas:P27202GeneID:844245Genevisible:P27202GO:GO:0009507GO:GO:0009534GO:GO:0009535
GO:GO:0009579GO:GO:0009654GO:GO:0009735GO:GO:0010270Gramene:AT1G79040.1hmmpanther:PTHR34369hmmpanther:PTHR34369:SF2
HOGENOM:HOG000242632InParanoid:P27202IntAct:P27202InterPro:IPR006814iPTMnet:P27202KEGG:ath:AT1G79040KO:K03541
OMA:NENEWSAPaxDb:P27202Pfam:P27202Pfam:PF04725PhylomeDB:P27202PIR:S17430PRIDE:P27202
PRO:PR:P27202Proteomes:UP000006548RefSeq:NP_178025.1STRING:3702.AT1G79040.1TAIR:AT1G79040tair10-symbols:PSBRTMHMM:TMhelix
UniGene:At.23809UniGene:At.24218UniGene:At.317UniProt:P27202UniProt:Q0WWI7
Coordinates (TAIR10) chr1:+:29736085..29736781
Molecular Weight (calculated) 14586.50 Da
IEP (calculated) 10.10
GRAVY (calculated) -0.00
Length 140 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASVMLSSV TLKPAGFTVE KTAARGLPSL TRARPSFKIV ASGVKKIKTD KPFGINGSMD LRDGVDASGR KGKGYGVYKY VDKYGANVDG YSPIYNENEW
101: SASGDVYKGG VTGLAIWAVT LAGILAGGAL LVYNTSALAQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)