suba logo
AT1G78950.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.657
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Terpenoid cyclases family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Terpenoid cyclases family protein; CONTAINS InterPro DOMAIN/s: Terpene synthase, conserved site (InterPro:IPR002365), Squalene cyclase (InterPro:IPR018333), Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: camelliol C synthase 1 (TAIR:AT1G78955.1); Has 2107 Blast hits to 2005 proteins in 574 species: Archae - 6; Bacteria - 886; Metazoa - 160; Fungi - 240; Plants - 609; Viruses - 0; Other Eukaryotes - 206 (source: NCBI BLink).
Protein Annotations
BRENDA:5.4.99.39EC:5.4.99.39eggNOG:COG1657eggNOG:KOG0497EMBL:AB374428EMBL:AC002986EMBL:CP002684
EnsemblPlants:AT1G78950EnsemblPlants:AT1G78950.1entrez:844234Gene3D:1.50.10.20GeneID:844234Genevisible:B6EXY6GO:GO:0042300
Gramene:AT1G78950.1hmmpanther:PTHR11764hmmpanther:PTHR11764:SF18HOGENOM:HOG000234317InterPro:IPR002365InterPro:IPR008930InterPro:IPR018333
InterPro:IPR032696InterPro:IPR032697KEGG:ath:AT1G78950KO:K15813OMA:LTINDDMPaxDb:B6EXY6Pfam:B6EXY6
Pfam:PF13243Pfam:PF13249PhylomeDB:B6EXY6PIR:T01060PRIDE:B6EXY6PRO:PR:B6EXY6PROSITE:PS01074
ProteinModelPortal:B6EXY6Proteomes:UP000006548RefSeq:NP_178016.2scanprosite:PS01074SMR:B6EXY6STRING:3702.AT1G78950.1SUPFAM:SSF48239
TAIR:AT1G78950TIGRfam:TIGR01787TIGRFAMs:TIGR01787UniGene:At.34208UniProt:B6EXY6
Coordinates (TAIR10) chr1:-:29684558..29688673
Molecular Weight (calculated) 86957.90 Da
IEP (calculated) 6.72
GRAVY (calculated) -0.28
Length 759 amino acids
Sequence (TAIR10)
(BLAST)
001: MWRLKIGEGN GDDPYLFTTN NFAGRQTWEF DPDGGSPEER HSVVEARRIF YDNRFHVKAS SDLLWRMQFL REKKFEQRIA PVKVEDSEKV TFETATSALR
101: RGIHFFSALQ ASDGHWPAEN AGPLFFLPPL VFCLYITGHL DEVFTSEHRK EILRYIYCHQ KEDGGWGLHI EGHSTMFCTT LNYICMRILG ESPDGGHDNA
201: CGRAREWILS HGGVTYIPSW GKTWLSILGV FDWSGSNPMP PEFWILPSFF PVHPAKMWSY CRMVYLPMSY LYGKRFVGPI TSLILQLRKE LYLQPYEEIN
301: WMKVRHLCAK EDTYYPRPLV QELVWDSLYI FAEPFLARWP FNKLLREKAL QLAMKHIHYE DENSRYITIG CVEKVLCMLA CWVEDPNGDY FKKHLSRISD
401: YLWMAEDGMK MQSFGSQLWD TGFAMQALLA SNLSSEISDV LRRGHEFIKN SQVGENPSGD YKSMYRHISK GAWTFSDRDH GWQVSDCTAH GLKCCLLFSM
501: LAPDIVGPKQ DPERLHDSVN ILLSLQSKNG GMTAWEPAGA PKWLELLNPT EMFSDIVIEH EYSECTSSAI QALSLFKQLY PDHRTTEITA FIKKAAEYLE
601: NMQTRDGSWY GNWGICFTYG TWFALAGLAA AGKTFNDCEA IRKGVQFLLA AQKDNGGWGE SYLSCSKKIY IAQVGEISNV VQTAWALMGL IHSGQAERDP
701: IPLHRAAKLI INSQLESGDF PQQQATGVFL KNCTLHYAAY RNIHPLWALA EYRARVSLP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)