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AT1G78900.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.500
vacuole 0.500
ASURE: golgi,vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22923678 (2012): plant-type vacuole
  • PMID:22430844 (2012): Golgi
  • PMID:22215637 (2012): plasma membrane
  • PMID:21896887 (2011): mitochondrion mitochondrial envelope mitochondrial outer membrane
  • PMID:21531424 (2011): plastid
  • PMID:21433285 (2011): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:19288221 (2010): plastid
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:16635983 (2006): plasma membrane
  • PMID:16618929 (2006): plant-type vacuole
  • PMID:15574830 (2004): plasma membrane
  • PMID:15539469 (2004): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:15028209 (2004): plastid
  • PMID:14760709 (2004): plant-type vacuole
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : vacuolar ATP synthase subunit A
Curator
Summary (TAIR10)
Encodes catalytic subunit A of the vacuolar ATP synthase. Mutants are devoid of vacuolar ATPase activity as subunit A is encoded only by this gene and show strong defects in male gametophyte development and in Golgi stack morphology.
Computational
Description (TAIR10)
vacuolar ATP synthase subunit A (VHA-A); FUNCTIONS IN: hydrogen ion transporting ATP synthase activity, rotational mechanism, hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, proton-transporting ATPase activity, rotational mechanism, ATP binding; INVOLVED IN: response to salt stress, proton transport, Golgi organization, pollen development; LOCATED IN: in 8 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 17 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal (InterPro:IPR000793), ATPase, alpha/beta subunit, nucleotide-binding domain, active site (InterPro:IPR020003), ATPase, F1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR018118), ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal (InterPro:IPR004100), ATPase, V1 complex, subunit A (InterPro:IPR005725), ATPase, alpha/beta subunit, nucleotide-binding domain (InterPro:IPR000194); BEST Arabidopsis thaliana protein match is: ATP synthase alpha/beta family protein (TAIR:AT5G08670.1); Has 40508 Blast hits to 38748 proteins in 9967 species: Archae - 874; Bacteria - 22679; Metazoa - 1366; Fungi - 853; Plants - 8095; Viruses - 0; Other Eukaryotes - 6641 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G78900-MONOMERBioCyc:ARA:GQT-1615-MONOMERBioGrid:29447EC:3.6.3.14eggNOG:COG1155eggNOG:KOG1352EMBL:AC005679
EMBL:AY059909EMBL:AY081296EMBL:AY085759EMBL:BT002589EMBL:BT008383EMBL:CP002684EMBL:U65638
EnsemblPlants:AT1G78900EnsemblPlants:AT1G78900.1EnsemblPlants:AT1G78900.2entrez:844228ExpressionAtlas:O23654ExpressionAtlas:Q0WLF6Gene3D:1.10.1140.10
Gene3D:3.40.50.300GeneID:844228Genevisible:O23654GO:GO:0000325GO:GO:0002020GO:GO:0005524GO:GO:0005618
GO:GO:0005773GO:GO:0005774GO:GO:0005794GO:GO:0005886GO:GO:0007030GO:GO:0009506GO:GO:0009507
GO:GO:0009555GO:GO:0009651GO:GO:0009941GO:GO:0015991GO:GO:0016020GO:GO:0033180GO:GO:0046034
GO:GO:0046961GO:GO:0048046Gramene:AT1G78900.1Gramene:AT1G78900.2HAMAP:MF_00309hmmpanther:PTHR15184hmmpanther:PTHR15184:SF7
HOGENOM:HOG000161057InParanoid:O23654IntAct:O23654InterPro:IPR000194InterPro:IPR000793InterPro:IPR004100InterPro:IPR005725
InterPro:IPR020003InterPro:IPR022878InterPro:IPR024034InterPro:IPR027417InterPro:IPR031686iPTMnet:O23654KEGG:00190+3.6.3.14
KEGG:ath:AT1G78900KO:K02145MINT:MINT-8068433ncoils:CoilOMA:RDIGIMTPaxDb:O23654Pfam:O23654
Pfam:PF00006Pfam:PF00306Pfam:PF02874Pfam:PF16886PhylomeDB:O23654PIR:E96818PRIDE:O23654
PRO:PR:O23654PROSITE:PS00152ProteinModelPortal:O23654Proteomes:UP000006548Reactome:R-ATH-77387Reactome:R-ATH-917977RefSeq:NP_001031299.1
RefSeq:NP_178011.1scanprosite:PS00152SMR:O23654STRING:3702.AT1G78900.1SUPFAM:SSF47917SUPFAM:SSF50615SUPFAM:SSF52540
TAIR:AT1G78900tair10-symbols:VHA-ATCDB:3.A.2.2.5TIGRfam:TIGR01042TIGRFAMs:TIGR01042UniGene:At.24629UniGene:At.67925
UniProt:O23654UniProt:Q0WLF6
Coordinates (TAIR10) chr1:+:29660463..29664575
Molecular Weight (calculated) 68816.30 Da
IEP (calculated) 4.86
GRAVY (calculated) -0.17
Length 623 amino acids
Sequence (TAIR10)
(BLAST)
001: MPAFYGGKLT TFEDDEKESE YGYVRKVSGP VVVADGMAGA AMYELVRVGH DNLIGEIIRL EGDSATIQVY EETAGLTVND PVLRTHKPLS VELGPGILGN
101: IFDGIQRPLK TIARISGDVY IPRGVSVPAL DKDCLWEFQP NKFVEGDTIT GGDLYATVFE NTLMNHLVAL PPDAMGKITY IAPAGQYSLK DTVIELEFQG
201: IKKSYTMLQS WPVRTPRPVA SKLAADTPLL TGQRVLDALF PSVLGGTCAI PGAFGCGKTV ISQALSKYSN SDAVVYVGCG ERGNEMAEVL MDFPQLTMTL
301: PDGREESVMK RTTLVANTSN MPVAAREASI YTGITIAEYF RDMGYNVSMM ADSTSRWAEA LREISGRLAE MPADSGYPAY LAARLASFYE RAGKVKCLGG
401: PERNGSVTIV GAVSPPGGDF SDPVTSATLS IVQVFWGLDK KLAQRKHFPS VNWLISYSKY STALESFYEK FDPDFINIRT KAREVLQRED DLNEIVQLVG
501: KDALAEGDKI TLETAKLLRE DYLAQNAFTP YDKFCPFYKS VWMMRNIIHF YNLANQAVER AAGMDGQKIT YTLIKHRLGD LFYRLVSQKF EDPAEGEDTL
601: VEKFKKLYDD LNAGFRALED ETR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)