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AT1G78890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G16840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AK229144EMBL:BT025613EMBL:CP002684EnsemblPlants:AT1G78890
EnsemblPlants:AT1G78890.1entrez:844226GeneID:844226Gramene:AT1G78890.1
hmmpanther:PTHR33972hmmpanther:PTHR33972:SF2KEGG:ath:AT1G78890PhylomeDB:Q1H551
Proteomes:UP000006548RefSeq:NP_565193.1TAIR:AT1G78890UniGene:At.43852
UniProt:Q1H551
Coordinates (TAIR10) chr1:+:29656623..29657537
Molecular Weight (calculated) 17230.30 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.31
Length 155 amino acids
Sequence (TAIR10)
(BLAST)
001: MARSLSPSLS LSRYRFAAAS LLLPSSQTIF IRSQSSNRRS NSNHLGVIYE IDIAADPLVN KLEDAVHRIM VRRSAPDWLP FVPGASFWVP PPRSQSHGIA
101: KLVEKLANPI SDEESISISS VRGWPCSDYF IKGVKPQSVE TEMTSNTAYH SEDEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)