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AT1G78815.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF640)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LIGHT SENSITIVE HYPOCOTYLS 7 (LSH7); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT1G16910.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IW2VeggNOG:ENOG410Y75TEMBL:AC005679EMBL:AY086257EMBL:BT025756EMBL:CP002684EnsemblPlants:AT1G78815
EnsemblPlants:AT1G78815.1entrez:844218GeneID:844218Genevisible:Q9ZVA0GO:GO:0003677GO:GO:0005634GO:GO:0006355
GO:GO:0009299GO:GO:0009886Gramene:AT1G78815.1hmmpanther:PTHR31165hmmpanther:PTHR31165:SF9HOGENOM:HOG000239606InParanoid:Q9ZVA0
InterPro:IPR006936KEGG:ath:AT1G78815OMA:KRNPMKSPaxDb:Q9ZVA0Pfam:PF04852Pfam:Q9ZVA0Pfscan:PS51697
PhylomeDB:Q9ZVA0PIR:D96817PRIDE:Q9ZVA0PRO:PR:Q9ZVA0PROSITE:PS51697ProteinModelPortal:Q9ZVA0Proteomes:UP000006548
RefSeq:NP_565190.1STRING:3702.AT1G78815.1TAIR:AT1G78815tair10-symbols:LSH7UniGene:At.22687UniGene:At.70335UniProt:Q9ZVA0
Coordinates (TAIR10) chr1:-:29632054..29632641
Molecular Weight (calculated) 21618.50 Da
IEP (calculated) 10.43
GRAVY (calculated) -0.96
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MASHSNKGKG IAEGSSQPQS QPQPQPHQPQ SPPNPPALSR YESQKRRDWN TFCQYLRNQQ PPVHISQCGS NHILDFLQYL DQFGKTKVHI HGCVFFGQVE
101: PAGQCNCPLK QAWGSLDALI GRLRAAFEEN GGLPERNPFA GGGIRVFLRE VRDSQAKARG VPYKKRKKRK KRNPMKSHDG EDGTTGTSSS SNLAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)