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AT1G78710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Predictors External Curations
no data
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : TRICHOME BIREFRINGENCE-LIKE 42
Curator
Summary (TAIR10)
Encodes a member of the TBL (TRICHOME BIREFRINGENCE-LIKE) gene family containing a plant-specific DUF231 (domain of unknown function) domain. TBL gene family has 46 members, two of which (TBR/AT5G06700 and TBL3/AT5G01360) have been shown to be involved in the synthesis and deposition of secondary wall cellulose, presumably by influencing the esterification state of pectic polymers. A nomenclature for this gene family has been proposed (Volker Bischoff & Wolf Scheible, 2010, personal communication).
Computational
Description (TAIR10)
TRICHOME BIREFRINGENCE-LIKE 42 (TBL42); INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: central cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF828) (TAIR:AT2G31110.2); Has 1333 Blast hits to 1315 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 1331; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJRQeggNOG:ENOG411157MEMBL:AC005679EMBL:CP002684
EnsemblPlants:AT1G78710EnsemblPlants:AT1G78710.1EnsemblPlants:AT1G78710.2entrez:844207
ExpressionAtlas:Q9ZV89GeneID:844207Genevisible:Q9ZV89GO:GO:0005794
GO:GO:0016021GO:GO:0016413GO:GO:0071554hmmpanther:PTHR32285
hmmpanther:PTHR32285:SF30HOGENOM:HOG000238066InParanoid:Q9ZV89InterPro:IPR025846
InterPro:IPR026057InterPro:IPR029962KEGG:ath:AT1G78710OMA:MDHMEAY
PANTHER:PTHR32285PaxDb:Q9ZV89Pfam:PF13839Pfam:PF14416
Pfam:Q9ZV89PhylomeDB:Q9ZV89PIR:A96816PRIDE:Q9ZV89
PRO:PR:Q9ZV89Proteomes:UP000006548RefSeq:NP_001154476.1RefSeq:NP_177992.1
STRING:3702.AT1G78710.1TAIR:AT1G78710tair10-symbols:TBL42UniGene:At.10891
UniGene:At.52560UniProt:Q9ZV89
Coordinates (TAIR10) chr1:+:29602708..29604557
Molecular Weight (calculated) 40570.60 Da
IEP (calculated) 8.83
GRAVY (calculated) -0.29
Length 359 amino acids
Sequence (TAIR10)
(BLAST)
001: MNFHQVLFLL LLIFLVDLSD YGVLADKTND GYKNATKCNI YQGRWIYDNS SNPLYGTSTC PFIGLDCQKF GRPDKNYLHY RWQPTGCDIP RFNGRDFLTR
101: FKGKKILFVG DSLSNNMWVS LSCMLHAAVP NAKYTFQLNK GLSTFTIPEY GISVNFLKNG FLVDLVSDKT RGLILKLDSI SRGNQWLGSD VAIFNTFHWW
201: SHTGRAKTWD YFQTGDKIVK EMNRMEAFKI ALTTWSKWID HNIDPSKTRV FYQGVSPVHL NGGEWGKPGK TCLGETVPVQ GPSYPGRPNE GEAIVKSVIG
301: RMAKPVELLD VTAMTEMRKD GHPSIYAGGG DRLNDCSHWC LPGVPDAWNQ LLYTALLSH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)