suba logo
AT1G78670.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:15539469 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gamma-glutamyl hydrolase 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
gamma-glutamyl hydrolase 3 (GGH3); FUNCTIONS IN: hydrolase activity, omega peptidase activity, catalytic activity; INVOLVED IN: glutamine metabolic process; LOCATED IN: vacuole; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C26, gamma-glutamyl hydrolase (InterPro:IPR015527), Peptidase C26 (InterPro:IPR011697); BEST Arabidopsis thaliana protein match is: gamma-glutamyl hydrolase 2 (TAIR:AT1G78680.1); Has 364 Blast hits to 360 proteins in 88 species: Archae - 0; Bacteria - 9; Metazoa - 192; Fungi - 0; Plants - 79; Viruses - 0; Other Eukaryotes - 84 (source: NCBI BLink).
Protein Annotations
BioGrid:29422EC:3.4.19.9eggNOG:ENOG410XQKIeggNOG:KOG1559EMBL:AC005679EMBL:AF389281EMBL:AY088100
EMBL:BT000554EMBL:CP002684EnsemblPlants:AT1G78670EnsemblPlants:AT1G78670.1entrez:844203Gene3D:3.40.50.880GeneID:844203
Genevisible:Q9ZV85GO:GO:0005615GO:GO:0005618GO:GO:0005773GO:GO:0006508GO:GO:0006541GO:GO:0034722
GO:GO:0046900Gramene:AT1G78670.1gramene_plant_reactome:1119484gramene_plant_reactome:6876394hmmpanther:PTHR11315HOGENOM:HOG000006721InParanoid:Q9ZV85
InterPro:IPR011697InterPro:IPR015527InterPro:IPR029062KEGG:00790+3.4.19.9KEGG:ath:AT1G78670KO:K01307MEROPS:C26.A01
OMA:VMPIRLTPANTHER:PTHR11315PaxDb:Q9ZV85Pfam:PF07722Pfam:Q9ZV85Pfscan:PS51275PIR:E96815
PRIDE:Q9ZV85PRO:PR:Q9ZV85PROSITE:PS51275ProteinModelPortal:Q9ZV85Proteomes:UP000006548RefSeq:NP_177988.1SMR:Q9ZV85
STRING:3702.AT1G78670.1SUPFAM:SSF52317TAIR:AT1G78670tair10-symbols:ATGGH3tair10-symbols:GGH3UniGene:At.24566UniProt:Q9ZV85
Coordinates (TAIR10) chr1:+:29591053..29593319
Molecular Weight (calculated) 39884.30 Da
IEP (calculated) 6.17
GRAVY (calculated) -0.14
Length 352 amino acids
Sequence (TAIR10)
(BLAST)
001: MWRFCFFLSL LFFDVSAVKS AESIFLPSQI GVEDSRVFES LSLSPVCSAA DPNLNYKPVI GILTHPGEGR WDARLHSLKN YAYATNISYI AASYVKLAET
101: GGARVIPLIY NEPEEILFQK LELVNGVIFT GGWAKTGLYY DVVEKIFNKV MEKNDAGEHF PVYAMCLGFE ILSMIISQNR DILERFNSVN YASSLQFFKN
201: VNIEATVFQR FPPELLKKLS ADCLVMQNHY FGISPDNFQG NPYLSSFFNI VTTSADKDSK TFVSTIRSKR YPVTAFQWHP EKNAFEWGSS EIPHSEDAIQ
301: VTQHAANYLV SEARKSMNRP SSEKVLSNLI YNYKPTYSGY KGSGDDEVYI FT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)