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AT1G78650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA-directed DNA polymerases
Curator
Summary (TAIR10)
Similar to DNA polymerase delta (POLD3), which in other organism was shown to be involved in the elongation of DNA replication.
Computational
Description (TAIR10)
POLD3; FUNCTIONS IN: DNA-directed DNA polymerase activity; INVOLVED IN: DNA strand elongation involved in DNA replication; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DNA polymerase subunit Cdc27 (InterPro:IPR019038); Has 2595 Blast hits to 2034 proteins in 330 species: Archae - 0; Bacteria - 228; Metazoa - 1072; Fungi - 424; Plants - 126; Viruses - 27; Other Eukaryotes - 718 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JR2ZeggNOG:ENOG410XSD1EMBL:AC007260EMBL:CP002684
EnsemblPlants:AT1G78650EnsemblPlants:AT1G78650.1entrez:844201GeneID:844201
GO:GO:0003887GO:GO:0005634GO:GO:0006271GO:GO:0071897
Gramene:AT1G78650.1hmmpanther:PTHR17598InterPro:IPR019038KEGG:ath:AT1G78650
KO:K03504OMA:NRFCGVSPfam:PF09507PhylomeDB:Q9SYL7
PIR:C96815Proteomes:UP000006548Reactome:R-ATH-110314Reactome:R-ATH-174411
Reactome:R-ATH-174414Reactome:R-ATH-174417Reactome:R-ATH-174437Reactome:R-ATH-5651801
Reactome:R-ATH-5656169Reactome:R-ATH-5696397Reactome:R-ATH-5696400Reactome:R-ATH-6782135
Reactome:R-ATH-6782210Reactome:R-ATH-69091Reactome:R-ATH-69109Reactome:R-ATH-69166
Reactome:R-ATH-69183RefSeq:NP_565185.1SMR:Q9SYL7STRING:3702.AT1G78650.1
TAIR:AT1G78650tair10-symbols:POLD3UniGene:At.34264UniProt:Q9SYL7
Coordinates (TAIR10) chr1:+:29582987..29585508
Molecular Weight (calculated) 55545.30 Da
IEP (calculated) 9.14
GRAVY (calculated) -0.91
Length 509 amino acids
Sequence (TAIR10)
(BLAST)
001: MTHTETLNLL DEIESFVSDQ LQVVSYKWLS RNFSLSSNTA KRLLKDFVEK HGKGLEVVYI VSGLLKNGPS DYHARLASST ELPEVEKEFN GKYSVHIYSV
101: QASIPMDPAA IWNTEFVQAE ELFRQPSATD NCLKGNRFCG VSNSCVKRNI EGATENVTAP RTESVRTTGQ SKSSSNFQKS TVPSNQGKNF QHSSSNVGHQ
201: AKSESIAAPA KNQSAKSSLD KEKAFHVPAN KKNGQGEKSV TGTGGLLKNM WGRVPVKTED DSPTVDVKNH ITNHSEPQKP SHDADKKGGS DDETRDANFM
301: RAPKDNRKRK VIFDFSDDEY EDVISLASPS SPKVNSRPDV ELSSEDSGPE KPDADVSPEI KSEEPEASKE DRQNTASVDA STTLSTEKIQ AIGSEAEVNP
401: SKRRTTAVPS SPKRKKVLKS RIDDRGREVT EVVWEETETN AKKKEDTNTS KKLDDGKTAN AVNRAVAQKK SPAIGNTAAT NAGGKAGSKK GGNVKDPKQG
501: NIMSFFKKV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)