AT1G78620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function DUF92, transmembrane | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Protein of unknown function DUF92, transmembrane; LOCATED IN: chloroplast, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF92, transmembrane (InterPro:IPR002794); Has 865 Blast hits to 865 proteins in 301 species: Archae - 133; Bacteria - 238; Metazoa - 78; Fungi - 68; Plants - 85; Viruses - 0; Other Eukaryotes - 263 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29573862..29575758 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 34876.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.37 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.41 | ||||||||||||||||||||||||||||||||||||
| Length | 333 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MATISSTLLL NSSRSALPLR FPKFSGFSSS SPFARSYRFG RRNLEPLSNG MLSSGSRADG ATAAAASMEG VMTEAMKLIQ SASPTWKSAV ANNLLIFVLG 101: SPLLVTGLSA SGIAAAFLLG TLTWRAYGSA GFLLVAAYFV IGTAATKVKM TQKEAQGVAE KRKGRRGPRS VIGSSAAGCV CAFLSIYQVG GAAFSQLFRL 201: GFVSSFCTKV SDTVSSEIGK AYGKTTYLAT TFKIVPRGTE GAMSLEGTLA GLLASFFLAS VGCFLGQITP PEAAVCVLAS QIANLGESII GASFQDKEGF 301: KWLNNDVVNV INISLGSIVA ILMQQFILQN WVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)