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AT1G78600.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : light-regulated zinc finger protein 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
light-regulated zinc finger protein 1 (LZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box zinc finger family protein (TAIR:AT1G06040.1); Has 1826 Blast hits to 1364 proteins in 120 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 1701; Viruses - 0; Other Eukaryotes - 109 (source: NCBI BLink).
Protein Annotations
EMBL:AC007260EMBL:AY087387EMBL:AY093108EMBL:BT006324EMBL:CP002684EnsemblPlants:AT1G78600EnsemblPlants:AT1G78600.1
entrez:844196ExpressionAtlas:Q9SYM2GeneID:844196Genevisible:Q9SYM2GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0008270hmmpanther:PTHR31832hmmpanther:PTHR31832:SF4HOGENOM:HOG000239240InParanoid:Q9SYM2IntAct:Q9SYM2InterPro:IPR000315
Pfam:PF00643Pfam:Q9SYM2Pfscan:PS50119PhylomeDB:Q9SYM2PIR:F96814PRIDE:Q9SYM2PRO:PR:Q9SYM2
PROSITE:PS50119ProteinModelPortal:Q9SYM2Proteomes:UP000006548RefSeq:NP_565183.1SMART:SM00336TAIR:AT1G78600tair10-symbols:DBB3
tair10-symbols:LZF1tair10-symbols:STH3UniGene:At.19261UniProt:Q9SYM2
Coordinates (TAIR10) chr1:+:29567370..29568662
Molecular Weight (calculated) 32865.20 Da
IEP (calculated) 6.31
GRAVY (calculated) -0.63
Length 299 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIQCNVCEA AEATVLCCAD EAALCWACDE KIHAANKLAG KHQRVPLSAS ASSIPKCDIC QEASGFFFCL QDRALLCRKC DVAIHTVNPH VSAHQRFLLT
101: GIKVGLESID TGPSTKSSPT NDDKTMETKP FVQSIPEPQK MAFDHHHHQQ QQEQQEGVIP GTKVNDQTST KLPLVSSGST TGSIPQWQIE EIFGLTDFDQ
201: SYEYMENNGS SKADTSRRGD SDSSSMMRSA EEDGEDNNNC LGGETSWAVP QIQSPPTASG LNWPKHFHHH SVFVPDITSS TPYTGSSPNQ RVGKRRRRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)