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AT1G78510.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:15784989 (2005): endoplasmic reticulum
  • PMID:15653808 (2004): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : solanesyl diphosphate synthase 1
Curator
Summary (TAIR10)
Encodes a protein with solanesyl diphosphate synthase activity.
Computational
Description (TAIR10)
solanesyl diphosphate synthase 1 (SPS1); CONTAINS InterPro DOMAIN/s: Solanesyl diphosphate synthase (InterPro:IPR014120), Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: solanesyl diphosphate synthase 2 (TAIR:AT1G17050.1); Has 16774 Blast hits to 16749 proteins in 2959 species: Archae - 341; Bacteria - 9542; Metazoa - 459; Fungi - 581; Plants - 425; Viruses - 0; Other Eukaryotes - 5426 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G78510-MONOMERBioCyc:MetaCyc:AT1G78510-MONOMERBioGrid:29406BRENDA:2.5.1.85EC:2.5.1.85eggNOG:COG0142eggNOG:KOG0776
EMBL:AB071514EMBL:AB188497EMBL:AC007260EMBL:AK229738EMBL:BT025550EMBL:CP002684EnsemblPlants:AT1G78510
EnsemblPlants:AT1G78510.1entrez:844187Gene3D:1.10.600.10GeneID:844187Genevisible:Q8S948GO:GO:0005783GO:GO:0008299
GO:GO:0009536GO:GO:0010236GO:GO:0015979GO:GO:0046872GO:GO:0050347GO:GO:0052924gramene_pathway:2.5.1.-
gramene_pathway:2.5.1.11gramene_pathway:2.5.1.29gramene_pathway:2.5.1.30gramene_pathway:2.5.1.33gramene_pathway:2.5.1.85gramene_pathway:PWY-5120gramene_pathway:PWY-5805-ARA
gramene_pathway:PWY-6520gramene_pathway:PWYQT-4449gramene_plant_reactome:1119367gramene_plant_reactome:6873833hmmpanther:PTHR12001hmmpanther:PTHR12001:SF18HOGENOM:HOG000009104
InterPro:IPR000092InterPro:IPR008949InterPro:IPR014120InterPro:IPR017446iPTMnet:Q8S948KEGG:ath:AT1G78510KO:K05356
OMA:TETCELIPANTHER:PTHR12001PANTHER:PTHR12001:SF18PaxDb:Q8S948Pfam:PF00348Pfam:Q8S948PhylomeDB:Q8S948
PIR:F96813PRIDE:Q8S948PRO:PR:Q8S948PROSITE:PS00444PROSITE:PS00723ProteinModelPortal:Q8S948Proteomes:UP000006548
RefSeq:NP_001077840.1RefSeq:NP_177972.2scanprosite:PS00444scanprosite:PS00723SMR:Q8S948STRING:3702.AT1G78510.1SUPFAM:SSF48576
TAIR:AT1G78510tair10-symbols:SPS1TIGRfam:TIGR02749TIGRFAMs:TIGR02749UniGene:At.34283UniProt:Q8S948
Coordinates (TAIR10) chr1:-:29535410..29537163
Molecular Weight (calculated) 44470.60 Da
IEP (calculated) 4.87
GRAVY (calculated) -0.04
Length 406 amino acids
Sequence (TAIR10)
(BLAST)
001: MMTSCRNIDL GTMMMACGCG RRQFPSLAKT VCKFTSSNRS YGGLVGSCKA VPTKSKEISL LNGIGQSQTV SFDLKQESKQ PISLVTLFEL VAVDLQTLND
101: NLLSIVGAEN PVLISAAEQI FGAGGKRMRP GLVFLVSHAT AELAGLKELT TEHRRLAEII EMIHTASLIH DDVLDESDMR RGKETVHELF GTRVAVLAGD
201: FMFAQASWYL ANLENLEVIK LISQVIKDFA SGEIKQASSL FDCDTKLDEY LLKSFYKTAS LVAASTKGAA IFSRVEPDVT EQMYEFGKNL GLSFQIVDDI
301: LDFTQSTEQL GKPAGSDLAK GNLTAPVIFA LEREPRLREI IESEFCEAGS LEEAIEAVTK GGGIKRAQEL AREKADDAIK NLQCLPRSGF RSALEDMVLY
401: NLERID
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)