suba logo
AT1G78480.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Prenyltransferase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Prenyltransferase family protein; FUNCTIONS IN: catalytic activity; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Terpenoid cylases/protein prenyltransferase alpha-alpha toroid (InterPro:IPR008930), Prenyltransferase/squalene oxidase (InterPro:IPR001330); BEST Arabidopsis thaliana protein match is: lupeol synthase 2 (TAIR:AT1G78960.1); Has 675 Blast hits to 672 proteins in 191 species: Archae - 0; Bacteria - 5; Metazoa - 65; Fungi - 169; Plants - 397; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1270-MONOMEReggNOG:COG1657eggNOG:KOG0497EMBL:AC013430
EMBL:CP002684EnsemblPlants:AT1G78480EnsemblPlants:AT1G78480.1entrez:844184
Gene3D:1.50.10.20GeneID:844184GO:GO:0016021GO:GO:0016740
Gramene:AT1G78480.1hmmpanther:PTHR11764hmmpanther:PTHR11764:SF18InterPro:IPR001330
InterPro:IPR008930KEGG:ath:AT1G78480Pfam:PF00432PhylomeDB:Q9M9G0
Proteomes:UP000006548RefSeq:NP_177969.1SMR:Q9M9G0STRING:3702.AT1G78480.1
SUPFAM:SSF48239TAIR:AT1G78480TMHMM:TMhelixUniGene:At.51313
UniProt:Q9M9G0
Coordinates (TAIR10) chr1:-:29525501..29526363
Molecular Weight (calculated) 23497.40 Da
IEP (calculated) 5.30
GRAVY (calculated) 0.08
Length 202 amino acids
Sequence (TAIR10)
(BLAST)
001: MGHVQLLTPC FYSFPFFSFF LLFFLFNAKN VFILISVDLT VGTVFELEAK VEQVIPPVKV EDGESTTHET RRMRYGEEFL SSRLCRPPMV TGLEKSLDLS
101: SSFLHWYVSS SFIGHLEEIF DAEHREEILR YIYRHLNDDG GWGLHVEGKS FMFCTALNYI CLRILREGPD EGREYACKLT SKMPWIVTFL LIYNNESCFP
201: SI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)