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AT1G78340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : glutathione S-transferase TAU 22
Curator
Summary (TAIR10)
Encodes glutathione transferase belonging to the tau class of GSTs. Naming convention according to Wagner et al. (2002).
Computational
Description (TAIR10)
glutathione S-transferase TAU 22 (GSTU22); CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Glutathione S-transferase, C-terminal (InterPro:IPR004046), Glutathione S-transferase, C-terminal-like (InterPro:IPR010987), Glutathione S-transferase/chloride channel, C-terminal (InterPro:IPR017933), Glutathione S-transferase, N-terminal (InterPro:IPR004045), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: glutathione S-transferase TAU 19 (TAIR:AT1G78380.1); Has 8630 Blast hits to 8536 proteins in 1254 species: Archae - 0; Bacteria - 4269; Metazoa - 979; Fungi - 176; Plants - 2169; Viruses - 0; Other Eukaryotes - 1037 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G78340-MONOMERBioGrid:29388EC:2.5.1.18eggNOG:ENOG410XSIXeggNOG:KOG0406EMBL:AC013430EMBL:AK117519
EMBL:AK176247EMBL:AY086469EMBL:BT005427EMBL:CP002684EnsemblPlants:AT1G78340EnsemblPlants:AT1G78340.1entrez:844169
Gene3D:1.20.1050.10Gene3D:3.40.30.10GeneID:844169Genevisible:Q8GYM1GO:GO:0004364GO:GO:0005737GO:GO:0005829
GO:GO:0006749GO:GO:0009407GO:GO:0009636Gramene:AT1G78340.1hmmpanther:PTHR11260hmmpanther:PTHR11260:SF174HOGENOM:HOG000125749
InParanoid:Q8GYM1IntAct:Q8GYM1InterPro:IPR004045InterPro:IPR010987InterPro:IPR012336iPTMnet:Q8GYM1KEGG:ath:AT1G78340
KO:K00799OMA:IEPECPTPaxDb:Q8GYM1Pfam:PF02798Pfam:PF13410Pfam:Q8GYM1Pfscan:PS50404
Pfscan:PS50405PhylomeDB:Q8GYM1PRIDE:Q8GYM1PRO:PR:Q8GYM1PROSITE:PS50404PROSITE:PS50405ProteinModelPortal:Q8GYM1
Proteomes:UP000006548RefSeq:NP_177956.1SMR:Q8GYM1STRING:3702.AT1G78340.1SUPFAM:SSF47616SUPFAM:SSF52833TAIR:AT1G78340
tair10-symbols:ATGSTU22tair10-symbols:GSTU22UniGene:At.34312UniProt:Q8GYM1
Coordinates (TAIR10) chr1:-:29473046..29473797
Molecular Weight (calculated) 25283.30 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.35
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MADEVILLDF WPSPFGVRAR IALREKGVEF EYREENLRDK SPLLLQMNPV HKKIPVLIHN GKPVCESMNV VQYIDEVWSD KNPILPSDPY QRAQARFWVD
101: FVDTKLFEPA DKIWQTKGEE QETAKKEYIE ALKILETELG DKPYFGGDTF GFVDIAMTGY YSWFEASEKL ANFSIEPECP TLMASAKRCL QRESVVQSLH
201: DSEKILAFAY KIRKIYCV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)