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AT1G78310.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT2G35230.1); Has 2188 Blast hits to 1760 proteins in 229 species: Archae - 0; Bacteria - 55; Metazoa - 822; Fungi - 398; Plants - 644; Viruses - 80; Other Eukaryotes - 189 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IX1TeggNOG:ENOG410Z611EMBL:AC013430EMBL:AY065462EMBL:AY087538EMBL:AY117330EMBL:CP002684
EnsemblPlants:AT1G78310EnsemblPlants:AT1G78310.1entrez:844166GeneID:844166Genevisible:Q9M9F0GO:GO:0005634GO:GO:0006883
GO:GO:0030007GO:GO:0043433GO:GO:1901001Gramene:AT1G78310.1hmmpanther:PTHR33783hmmpanther:PTHR33783:SF1HOGENOM:HOG000090492
IntAct:Q9M9F0InterPro:IPR008889KEGG:ath:AT1G78310OMA:VANREIDPaxDb:Q9M9F0Pfam:PF05678Pfam:Q9M9F0
PhylomeDB:Q9M9F0PRIDE:Q9M9F0PRO:PR:Q9M9F0ProteinModelPortal:Q9M9F0Proteomes:UP000006548RefSeq:NP_565177.1STRING:3702.AT1G78310.1
TAIR:AT1G78310UniGene:At.28469UniProt:Q9M9F0
Coordinates (TAIR10) chr1:-:29464003..29464938
Molecular Weight (calculated) 33578.60 Da
IEP (calculated) 10.42
GRAVY (calculated) -0.63
Length 311 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKSCNSSGD SSAVSASATS STGNNTTNRD HYLRQLNKLS HKISKPTNSS SSVSVANREI DLPPPPPLQI NQGNLHQHQP PVYNINKNDF RDVVQKLTGS
101: PAHERISAPP QQPIHHPKPQ QSSRLHRIRP PPLVHVINRP PGLLNDALIP QGSHHMNQNW TGVGFNLRPT APLSPLPPLP PVHAAAESPV SSYMRYLQNS
201: MFAIDSNRKE FSGLSPLAPL VSPRWYQQQE NAPPSQHNSF PPPHPPPPSS AVSQTVPTSI PAPPLFGCSS SPKSPYGLLS PSILLSPSSG QLGFPVSPTT
301: VPLPSPKYKG H
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)