AT1G78280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:golgi 0.357 plasma membrane 0.265 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : transferases, transferring glycosyl groups | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
transferases, transferring glycosyl groups; CONTAINS InterPro DOMAIN/s: Transcription factor jumonji/aspartyl beta-hydroxylase (InterPro:IPR003347), F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Transcription factor jumonji (InterPro:IPR013129), Aminoglycoside phosphotransferase (InterPro:IPR002575), Protein kinase-like domain (InterPro:IPR011009); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06550.1); Has 1510 Blast hits to 1497 proteins in 307 species: Archae - 0; Bacteria - 312; Metazoa - 658; Fungi - 137; Plants - 199; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29452823..29457118 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108510.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.79 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.43 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 943 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MTTLGQRDRR PDALGSLSVL PDETICVLLE YLAPRDIAHL ACVSSVMYIL CNEEPLWMSL CLRRAKGPLE YKGSWKKTTL HLEGVTQEND AYRKCFHFDG 101: FMSLYLYKRF YRCNTSLDGF SFDNGNVERR RNISLDEFSK EYDAKKPVLL SGLADSWPAS NTWTIDQLSE KYGEVPFRIS QRSPNKISMK FKDYIAYMKT 201: QRDEDPLYVF DDKFGEAAPE LLKDYSVPHL FQEDWFEILD KESRPPYRWL IVGPERSGAS WHVDPALTSA WNTLLCGRKR WALYPPGKVP LGVTVHVNED 301: DGDVSIDTPS SLQWWLDYYP LLADEDKPIE CTLLPGETIY VPSGWWHCIL NLEPTVAVTQ NFVNKENFGF VCLDMAPGYH HKGVCRAGLL ALDDENSEDL 401: EEETHDEEDN TLSYSDLTRK EKRTRMNGGG ETENREEDVN GVSKRYNMWK NGFSYDIDFL ASFLDKERDH YNFPWSMGNS VGQREMRAWL SKLWVLKPEM 501: RELIWKGACI ALNAEKWLRC LEEVCTFHNL PLVTEDEKLP VGTGSNPVYL LSDYAIKLFV EGGLEQSMYG LGTELEFYDI LGRADSPLKT HIPEVLASGI 601: LFFEKGSYKV VPWDGKRIPD IISSSSFDFD ASMLNSEFPF GIWNKTLREH KNQGKPAPDS FGSLSSHVWP YIITKRCKGK IFAQLRDDLT WNDAQNLAFF 701: LGQQLRNLHL LPYPPVTRPE LLNVNAVHEE LNIPAEWKVF VDALCQKKKD VTSRLENWGN PIPRALMTKI DEYIPDDFFV DLLHVFKETN GGDEIKPCTW 801: IHSDVMDDNI HMEPYADDSV DGQHNSWRPS HILDFSDLTI GDPICDLIPI YLDVFRGDAD LLKKLLENYG LPLIRSRSSE NGTTKTADST RKKVLSPSYR 901: TMCYCILHEE NVLGSIFSIW DELRTAESWE QVEQTVWSLL NTY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)