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AT1G78240.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25122472 (2014): Golgi Golgi apparatus
  • PMID:22923678 (2012): Golgi
  • PMID:22430844 (2012): Golgi
  • PMID:21433285 (2011): plasma membrane
  • PMID:16618929 (2006): Golgi
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Curator
Summary (TAIR10)
Encodes TSD2 (TUMOROUS SHOOT DEVELOPMENT2), a putative methyltransferase with an essential role in cell adhesion and coordinated plant development.
Computational
Description (TAIR10)
TUMOROUS SHOOT DEVELOPMENT 2 (TSD2); FUNCTIONS IN: methyltransferase activity; INVOLVED IN: shoot development, homogalacturonan biosynthetic process, response to cytokinin stimulus, root development; LOCATED IN: Golgi apparatus; EXPRESSED IN: 32 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF248, methyltransferase putative (InterPro:IPR004159); BEST Arabidopsis thaliana protein match is: QUASIMODO2 LIKE 1 (TAIR:AT1G13860.3); Has 1228 Blast hits to 1207 proteins in 172 species: Archae - 9; Bacteria - 218; Metazoa - 0; Fungi - 44; Plants - 919; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink).
Protein Annotations
BioGrid:29379EC:2.1.1.-eggNOG:ENOG410IDY6eggNOG:ENOG410Y9W6EMBL:AC012680EMBL:AC013430EMBL:AK230024
EMBL:CP002684EnsemblPlants:AT1G78240EnsemblPlants:AT1G78240.1EnsemblPlants:AT1G78240.2entrez:844160Gene3D:3.40.50.150GeneID:844160
Genevisible:Q9C9Q8GO:GO:0000139GO:GO:0005768GO:GO:0005794GO:GO:0005802GO:GO:0007155GO:GO:0008168
GO:GO:0008757GO:GO:0009735GO:GO:0010289GO:GO:0016021GO:GO:0048364GO:GO:0048367Gramene:AT1G78240.1
Gramene:AT1G78240.2hmmpanther:PTHR10108hmmpanther:PTHR10108:SF899HOGENOM:HOG000238541InParanoid:Q9C9Q8InterPro:IPR004159InterPro:IPR029063
iPTMnet:Q9C9Q8KEGG:00253+2.1.1.-KEGG:00270+2.1.1.-KEGG:00332+2.1.1.-KEGG:00340+2.1.1.-KEGG:00350+2.1.1.-KEGG:00360+2.1.1.-
KEGG:00380+2.1.1.-KEGG:00450+2.1.1.-KEGG:00522+2.1.1.-KEGG:00624+2.1.1.-KEGG:00627+2.1.1.-KEGG:00860+2.1.1.-KEGG:00940+2.1.1.-
KEGG:00941+2.1.1.-KEGG:00942+2.1.1.-KEGG:00945+2.1.1.-KEGG:00950+2.1.1.-KEGG:00981+2.1.1.-KEGG:ath:AT1G78240ncoils:Coil
OMA:ILTMCIAPaxDb:Q9C9Q8Pfam:PF03141Pfam:Q9C9Q8PhylomeDB:Q9C9Q8PRIDE:Q9C9Q8PRO:PR:Q9C9Q8
ProteinModelPortal:Q9C9Q8Proteomes:UP000006548RefSeq:NP_001154475.1RefSeq:NP_177948.3SMR:Q9C9Q8STRING:3702.AT1G78240.1SUPFAM:SSF53335
TAIR:AT1G78240tair10-symbols:OSU1tair10-symbols:QUA2tair10-symbols:TSD2TMHMM:TMhelixUniGene:At.20566UniGene:At.70615
UniPathway:UPA00845UniProt:Q9C9Q8
Coordinates (TAIR10) chr1:-:29433173..29435815
Molecular Weight (calculated) 77901.30 Da
IEP (calculated) 7.34
GRAVY (calculated) -0.36
Length 684 amino acids
Sequence (TAIR10)
(BLAST)
001: MSMPLQRGIS GVRVSDSSDD LRDSQMKDKT ERARSTENNN LTLRFPFGFL FSNQSSSKHG GGGENGFSAD PYSARSRHRL MLLFLKISLV LIVVIALAGS
101: FWWTISISTS SRGHVYHNYR RLQEQLVSDL WDIGEISLGP NRWKELEYCN IESENFVPCF NVSENLALGY SNGDENDRFC GPGSKQECLE LPPVKYRVPL
201: RWPTGKDIIW HSNVKITAQE VVSSGSITKR MMMMEDDQIS FRSASPMSDE VEDYSHQIAE MIGIKKDNFI EAGVRTILDI GCGYGSFGAH LLSKQILTMC
301: IANYEASGSQ VQLTLERGLP AMIGSFISKQ LPYPSLSFDM LHCLRCGIDW DQKDGLLLVE IDRVLKPGGY FVWTSPLTNP RNKDHLKRWN FVHDFAESIC
401: WTLLNQQDET VVWKKTINTK CYSSRKPGVG PSVCTKGHDV ESPYYRPLQM CIGGTRSRRW IPIEGRTRWP SRSNMNKTEL SLYGLHPEVL GEDAENWKIT
501: VREYWSLLSP LIFSDHPKRP GDEDPSPPYN MLRNVLDMNA QFGGLNSALL EARKSVWVMN VVPTAGPNHL PMILDRGFVG VLHNWCEPFP TYPRTYDLVH
601: ADNLLSLQTS QPRKTCLLID IFTEIDRLLR PEGWVIIRDT AQLVEKARET ITQLKWEARV IEVESSSEQR LLICQKPFTK RQSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)