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AT1G78130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.833
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Major facilitator superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unfertilized embryo sac 2 (UNE2); CONTAINS InterPro DOMAIN/s: Major facilitator superfamily (InterPro:IPR020846), Major facilitator superfamily MFS-1 (InterPro:IPR011701), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G10190.1); Has 16910 Blast hits to 16851 proteins in 2099 species: Archae - 450; Bacteria - 14339; Metazoa - 386; Fungi - 319; Plants - 340; Viruses - 3; Other Eukaryotes - 1073 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0477eggNOG:KOG1330EMBL:AC012680EMBL:AK227331EMBL:BT004567EMBL:CP002684EnsemblPlants:AT1G78130
EnsemblPlants:AT1G78130.1entrez:844149GeneID:844149GO:GO:0009567GO:GO:0016021GO:GO:0055085Gramene:AT1G78130.1
hmmpanther:PTHR23505hmmpanther:PTHR23505:SF14HOGENOM:HOG000240506InterPro:IPR011701InterPro:IPR020846KEGG:ath:AT1G78130OMA:DDNTRGA
Pfam:PF07690Pfscan:PS50850PhylomeDB:Q9C9R9PIR:E96810PROSITE:PS50850Proteomes:UP000006548RefSeq:NP_177937.1
STRING:3702.AT1G78130.1SUPFAM:SSF103473TAIR:AT1G78130tair10-symbols:UNE2TMHMM:TMhelixUniGene:At.18013UniGene:At.71185
UniProt:Q9C9R9
Coordinates (TAIR10) chr1:+:29400171..29401814
Molecular Weight (calculated) 52612.00 Da
IEP (calculated) 6.42
GRAVY (calculated) 0.43
Length 490 amino acids
Sequence (TAIR10)
(BLAST)
001: MKAETMTLLL VNLAGIMERA DESLLPGVYK EVGLALHTDP TGLGSLTLLR SMVQAACYPL AAYMAIRHNR AHVIALGAFL WSAATFLVAF SSTFFQVAVS
101: RALNGIGLAL VAPAIQSLVA DSTDDANRGT AFGWLQLTAN IGSILGGLCS VLIAPLTFMG IPGWRVAFHI VGVISVIVGV LVRVFANDPH FVKDGVDVSN
201: QPGSRKPFCT EVKDLVREAD TVIKIRSFQI IVAQGVTGSF PWSALSFAPM WLELIGFSHG KTAFLMGLFV AASSLGGLFG GKMGDFLSTR LPNSGRIILA
301: QISSASAIPL AAILLLVLPD DPSTAAIHGL ILVLLGLFVS WNAPATNNPI FAEIVPEKSR TSVYALDKSF ESILSSFAPP IVGILAQHVY GYKPIPEGSS
401: RSTEIATDRE NAASLAKALY TSIGLPMAAC CFIYSFLYRS YPLDRDRARM EAFIDSEMRE LLPESSNRDI EFSQEEDPFA NHVNPNLQAR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)