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AT1G78090.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : trehalose-6-phosphate phosphatase
Curator
Summary (TAIR10)
homologous to the C-terminal part of microbial trehalose-6-phosphate phosphatases
Computational
Description (TAIR10)
trehalose-6-phosphate phosphatase (TPPB); CONTAINS InterPro DOMAIN/s: HAD-superfamily hydrolase, subfamily IIB (InterPro:IPR006379), Trehalose-phosphatase (InterPro:IPR003337); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT1G22210.1); Has 2381 Blast hits to 2375 proteins in 857 species: Archae - 41; Bacteria - 1374; Metazoa - 220; Fungi - 153; Plants - 455; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Protein Annotations
EC:3.1.3.12eggNOG:COG1877eggNOG:ENOG410IMM9EMBL:AC012680EMBL:AF007779EMBL:BT002801EMBL:BT004348
EMBL:CP002684EnsemblPlants:AT1G78090EnsemblPlants:AT1G78090.1entrez:844144Gene3D:3.40.50.1000GeneID:844144Genevisible:Q9C9S4
GO:GO:0004805GO:GO:0005992GO:GO:0016311Gramene:AT1G78090.1gramene_pathway:3.1.3.12gramene_pathway:TRESYN-PWYhmmpanther:PTHR10788
hmmpanther:PTHR10788:SF26HOGENOM:HOG000239289InParanoid:Q9C9S4InterPro:IPR003337InterPro:IPR006379InterPro:IPR023214KEGG:ath:AT1G78090
KO:K01087OMA:FITHEMRPaxDb:Q9C9S4Pfam:PF02358Pfam:Q9C9S4PhylomeDB:Q9C9S4PIR:H96809
PIR:T52058PRIDE:Q9C9S4PRO:PR:Q9C9S4ProteinModelPortal:Q9C9S4Proteomes:UP000006548RefSeq:NP_177932.1SMR:Q9C9S4
STRING:3702.AT1G78090.1SUPFAM:SSF56784TAIR:AT1G78090tair10-symbols:ATTPPBtair10-symbols:TPPBTIGRfam:TIGR00685TIGRfam:TIGR01484
TIGRFAMs:TIGR00685TIGRFAMs:TIGR01484UniGene:At.20226UniPathway:UPA00299UniProt:Q9C9S4
Coordinates (TAIR10) chr1:+:29373955..29376295
Molecular Weight (calculated) 42450.80 Da
IEP (calculated) 8.35
GRAVY (calculated) -0.38
Length 374 amino acids
Sequence (TAIR10)
(BLAST)
001: MTNQNVIVSD RKPILGLKTI TVSVSNSPLF SNSFPTYFNF PRRKLLKLLE AADKNNLVVA PKITSMIDSM RDSSPTRLRS SSYDSVSDND DKTSWIVRFP
101: SALNMFDEIV NAAKGKQIVM FLDYDGTLSP IVEDPDKAFI THEMREVVKD VASNFPTAIV TGRSIEKVRS FVQVNEIYYA GSHGMDIEGP TNENSNGQSN
201: ERVLFQPARE FLPMIEKVVN ILEEKTKWIP GAMVENNKFC LSVHFRRVDE KRWPALAEVV KSVLIDYPKL KLTQGRKVLE IRPTIKWDKG QALNFLLKSL
301: GYENSDDVVP VYIGDDRTDE DAFKVLRERG QGFGILVSKV PKDTNASYSL QDPSQVNKFL ERLVEWKRKT VGEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)