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AT1G78040.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pollen Ole e 1 allergen and extensin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041), TonB box, conserved site (InterPro:IPR010916); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT4G08685.1); Has 286 Blast hits to 286 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 286; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JXFZeggNOG:ENOG411040CEMBL:AK227504EMBL:AY086214EMBL:BT004592EMBL:CP002684EnsemblPlants:AT1G78040
EnsemblPlants:AT1G78040.1EnsemblPlants:AT1G78040.2entrez:844139GeneID:844139Gramene:AT1G78040.1Gramene:AT1G78040.2hmmpanther:PTHR31614
hmmpanther:PTHR31614:SF5HOGENOM:HOG000240768InterPro:IPR010916KEGG:ath:AT1G78040OMA:TRYANSMPfam:PF01190PhylomeDB:Q8LD45
PROSITE:PS00430Proteomes:UP000006548RefSeq:NP_001077838.1RefSeq:NP_177927.1scanprosite:PS00430STRING:3702.AT1G78040.1TAIR:AT1G78040
UniGene:At.25076UniGene:At.68115UniProt:Q8LD45
Coordinates (TAIR10) chr1:+:29345993..29346840
Molecular Weight (calculated) 19276.30 Da
IEP (calculated) 7.39
GRAVY (calculated) -0.24
Length 171 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKLVMLLVL CILPAIAMAA RRGNIGKNTM VVQGSTYCDI CKFGFETPES SYFIPGATVK LSCKDRKTME EVYTDKAVSD KEGKYKFIVH DDHRDQMCDV
101: LLVKSSDKTC SKISVGREKS RVILNHYSGI ASQIRHANNM GFEKEVSDVF CSALFQKYMV DEDEDDIKNH L
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)