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AT1G77930.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 0.859
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chaperone DnaJ-domain superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chaperone DnaJ-domain superfamily protein; FUNCTIONS IN: heat shock protein binding; INVOLVED IN: protein folding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), Heat shock protein DnaJ, N-terminal (InterPro:IPR001623), Heat shock protein DnaJ, conserved site (InterPro:IPR018253); BEST Arabidopsis thaliana protein match is: Chaperone DnaJ-domain superfamily protein (TAIR:AT4G36040.1); Has 19455 Blast hits to 19427 proteins in 3128 species: Archae - 161; Bacteria - 8834; Metazoa - 3140; Fungi - 1483; Plants - 1557; Viruses - 8; Other Eukaryotes - 4272 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0484eggNOG:KOG0715EMBL:AC009243EMBL:BT025796EMBL:CP002684EnsemblPlants:AT1G77930EnsemblPlants:AT1G77930.1
EnsemblPlants:AT1G77930.2entrez:844128Gene3D:1.10.287.110GeneID:844128GO:GO:0009507Gramene:AT1G77930.1Gramene:AT1G77930.2
hmmpanther:PTHR24078hmmpanther:PTHR24078:SF231HOGENOM:HOG000005682InterPro:IPR001623InterPro:IPR018253KEGG:ath:AT1G77930ncoils:Coil
OMA:RDIMRRKPfam:PF00226Pfscan:PS50076PhylomeDB:Q9SH08PIR:H96808PRINTS:PR00625PROSITE:PS00636
PROSITE:PS50076Proteomes:UP000006548RefSeq:NP_565163.1RefSeq:NP_974166.1scanprosite:PS00636SMART:SM00271SMR:Q9SH08
STRING:3702.AT1G77930.1SUPFAM:SSF46565TAIR:AT1G77930UniGene:At.34365UniGene:At.68025UniProt:Q9SH08
Coordinates (TAIR10) chr1:+:29301184..29302467
Molecular Weight (calculated) 31909.10 Da
IEP (calculated) 10.09
GRAVY (calculated) -0.88
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MSNLRAICRP YSVFSSIVCC SRHQSRSLFR VSIKNVAFRN QSSNSSWFRS KNSNLWFRLN QRKTLVRASN WSQEKSPYDT LELDRNAEEE QIKVAYRRLA
101: KFYHPDVYDG KGTLEEGETA EARFIKIQAA YELLMDSEKK VQYDMDNRVN PMKASQAWME WLMKKRKAFD QRGDMAVAAW AEQQQLDINL RARRLSRSKV
201: DPEEERKILE KEKKASRELF NSTLKRHTLV LKKRDLMRKK AEEDKKKLIT QLLAAEGLEL DTEAEEEEAA K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)