AT1G77890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.983 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA-directed RNA polymerase II protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA-directed RNA polymerase II protein; BEST Arabidopsis thaliana protein match is: DNA-directed RNA polymerase II protein (TAIR:AT4G08540.1); Has 59 Blast hits to 57 proteins in 21 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 3; Plants - 46; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29292497..29295440 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 52122.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.64 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.53 | ||||||||||||||||||||||||||||
| Length | 460 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEKSTKCAVC YKSFRPSICV DCVNRGLNEY KVKLDSLKSL REVSYFRLSG LLVTKEKAIS QRCWKELQNE KLAKLREKLQ LQVEKLQQSK NTFRSLSRNL 101: KERYGIIEST NVALEESRVH QLENHYSDTI GNHYLVYIDL TSERLYKQAL VMKQICKLFP LSRVTVEGQN KDGSSVQYDQ ICNALLPQGL NPLSVPPKEL 201: AASLGYMVQL LNLVVHKLSV PALHNLGFAG SCSRIWERDS YWNSYPSSPS NGYPLFVPIH DHYSFEEKSS WTGRDTTNFG VTSLKSDGSI EEDYHDLDLD 301: VVSLSSASPH SVETFRNLQQ GIAHLKQSVA HLTVYGYRSL SLEVPSGTST FETFAKLLAT LSSLKEVQSG LSLGLSSSNK QRHEPNKSVW NLNSSSSSTL 401: LNSSHTQPTT WNSSYYNVPN RDPSYMVEFP DVKKDKNSIG EWNLVEYPHS SRQPNHPNKY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)