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AT1G77800.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PHD finger family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PHD finger family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 3411 Blast hits to 1845 proteins in 212 species: Archae - 0; Bacteria - 3; Metazoa - 1916; Fungi - 635; Plants - 520; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5141eggNOG:KOG0954EMBL:CP002684EnsemblPlants:AT1G77800EnsemblPlants:AT1G77800.1entrez:844117ExpressionAtlas:F4I8J3
Gene3D:3.30.40.10GeneID:844117GO:GO:0008270Gramene:AT1G77800.1hmmpanther:PTHR13793hmmpanther:PTHR13793:SF96InParanoid:F4I8J3
InterPro:IPR001965InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786InterPro:IPR019787iPTMnet:F4I8J3ncoils:Coil
OMA:KAAVHIDPaxDb:F4I8J3Pfam:PF13831Pfam:PF13832Pfscan:PS50016PRIDE:F4I8J3PROSITE:PS01359
PROSITE:PS50016ProteinModelPortal:F4I8J3Proteomes:UP000006548Reactome:R-ATH-114608Reactome:R-ATH-3214847RefSeq:NP_177903.5scanprosite:PS01359
SMART:SM00249SMR:F4I8J3STRING:3702.AT1G77800.1SUPFAM:SSF57903TAIR:AT1G77800UniGene:At.66912UniProt:F4I8J3
Coordinates (TAIR10) chr1:+:29253800..29260190
Molecular Weight (calculated) 151703.00 Da
IEP (calculated) 7.69
GRAVY (calculated) -0.63
Length 1375 amino acids
Sequence (TAIR10)
(BLAST)
0001: MNVDQCQWRK KMMGRGVDGG CGAEEKPYRP FRRVALDKEN GYEDMGSLEI DFLAQASKNL SERSPFDVPE DGSTSVLSVP TLPIALANLL KNHSDNKKRH
0101: KKSHSGADKK KKKSSRQGDK LRSGSIWLEH EDYFRRLDFP DLETLSDLAS LRSLSSRNCF SIPSVEYDSI DIQQRETDAS AKNEDVVCGD GVVLEQIKNL
0201: LTKDISEGTV RKEEDVVKPM GVDNVGNGIS SGSDYSGSLE WVLGNRNRIL LTSERPSKKR KLLGSDAGLG KLMVAAPCEG NALLCDFCCT GHHQLIVCTS
0301: CKATVHKKCY GLLEDSGKPW LCSWCELENG RADSERPCLL CPKKGGILKP VLSKTENGGP AEFAHLFCSL WMPEVYIEDL KKMEPILNFP GIKETRRKLL
0401: CNLCKVKSGA CIRCCNVVVL TLSMPDNPIV WIIFTGKCFV GIYYHNAVEA GNRLEVWGKH GCDTVELRAF CSKHSDIQES GKSVEGGESN AAESRSPICH
0501: LPSESVGEGH LSNDEMGVDV GTPGTGSDIS RNSDLQELES PHSKFNLSAT DNVESGMTGR SNEDERTLSK SLSFGLILKK LIDLGKVDVK DVAAEIGINP
0601: DALRAKLTDG DLLPDLLGKV VKWLSQHAHM GSSDKGKNLK PKANGSVLKK EGSVSLAPDH SPEEKNSIVL DQKVHHGKSS VIPSDDHGEQ SNSSSSGVMM
0701: ENAFSLRPNS SQNRGNLNCP NPIILDLFNQ EAYPGFNPHR YIHKELSELG KEQTLKSSTD SDVARMTTNF DGSEEGNKHL QGAETFLQLS KARKLGILDL
0801: SPEDELEGEL LYYQLQLLGT AVSRKQLSDN LVYEVAKKLP LEIDEQHGRR WDDVLVNKYF HDVREARKQG RKEQRNKQAQ AVLAAATAAA ATSSRNTSLR
0901: KDMSEEPAQQ EMSTSRRKVV GSSHLVPQTK ESLLKMAVSG PPSEKRSDHH TPDFLVENPR TCDICRRSET IWNLIVVCSS CKVAVHIDCY KCAKESTGPW
1001: YCELCAESSS EPSFNFGEKP NSSTECTLCG GTTGAFRKTT NGQWVHAFCA EWSLESTFRR GQINPVQGME SLAKKTDNCC VCQRIYGACT KCSYGNCQTT
1101: FHPSCARSAG FHMTGGGKHP HKAYCEKHSM EQKAKAESQK HGAEELKSLK HYRVELERLR LLCERIVKRE KLKRELAISS HEILAAKRDH AARPLHVRNP
1201: FSPPEVSSDS ATTSIKGHPD SNISGSEAIQ RSDDITIDST VTDKRRGKGP LLMDTDQKTD DSATSKSRFS RKLTERQILS GKTVPRKHCI VSPSVSEDGD
1301: NGSKPKKQHV ETFAKELVMT SDEASFKNRR LPKGYFYVPV DCLQEDKPGN QKLASSDKPA NQKTSSGDQS GKDDG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)