AT1G77800.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PHD finger family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PHD finger family protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: homologue of trithorax (TAIR:AT2G31650.1); Has 3411 Blast hits to 1845 proteins in 212 species: Archae - 0; Bacteria - 3; Metazoa - 1916; Fungi - 635; Plants - 520; Viruses - 0; Other Eukaryotes - 337 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29253800..29260190 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 151703.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.69 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 1375 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MNVDQCQWRK KMMGRGVDGG CGAEEKPYRP FRRVALDKEN GYEDMGSLEI DFLAQASKNL SERSPFDVPE DGSTSVLSVP TLPIALANLL KNHSDNKKRH 0101: KKSHSGADKK KKKSSRQGDK LRSGSIWLEH EDYFRRLDFP DLETLSDLAS LRSLSSRNCF SIPSVEYDSI DIQQRETDAS AKNEDVVCGD GVVLEQIKNL 0201: LTKDISEGTV RKEEDVVKPM GVDNVGNGIS SGSDYSGSLE WVLGNRNRIL LTSERPSKKR KLLGSDAGLG KLMVAAPCEG NALLCDFCCT GHHQLIVCTS 0301: CKATVHKKCY GLLEDSGKPW LCSWCELENG RADSERPCLL CPKKGGILKP VLSKTENGGP AEFAHLFCSL WMPEVYIEDL KKMEPILNFP GIKETRRKLL 0401: CNLCKVKSGA CIRCCNVVVL TLSMPDNPIV WIIFTGKCFV GIYYHNAVEA GNRLEVWGKH GCDTVELRAF CSKHSDIQES GKSVEGGESN AAESRSPICH 0501: LPSESVGEGH LSNDEMGVDV GTPGTGSDIS RNSDLQELES PHSKFNLSAT DNVESGMTGR SNEDERTLSK SLSFGLILKK LIDLGKVDVK DVAAEIGINP 0601: DALRAKLTDG DLLPDLLGKV VKWLSQHAHM GSSDKGKNLK PKANGSVLKK EGSVSLAPDH SPEEKNSIVL DQKVHHGKSS VIPSDDHGEQ SNSSSSGVMM 0701: ENAFSLRPNS SQNRGNLNCP NPIILDLFNQ EAYPGFNPHR YIHKELSELG KEQTLKSSTD SDVARMTTNF DGSEEGNKHL QGAETFLQLS KARKLGILDL 0801: SPEDELEGEL LYYQLQLLGT AVSRKQLSDN LVYEVAKKLP LEIDEQHGRR WDDVLVNKYF HDVREARKQG RKEQRNKQAQ AVLAAATAAA ATSSRNTSLR 0901: KDMSEEPAQQ EMSTSRRKVV GSSHLVPQTK ESLLKMAVSG PPSEKRSDHH TPDFLVENPR TCDICRRSET IWNLIVVCSS CKVAVHIDCY KCAKESTGPW 1001: YCELCAESSS EPSFNFGEKP NSSTECTLCG GTTGAFRKTT NGQWVHAFCA EWSLESTFRR GQINPVQGME SLAKKTDNCC VCQRIYGACT KCSYGNCQTT 1101: FHPSCARSAG FHMTGGGKHP HKAYCEKHSM EQKAKAESQK HGAEELKSLK HYRVELERLR LLCERIVKRE KLKRELAISS HEILAAKRDH AARPLHVRNP 1201: FSPPEVSSDS ATTSIKGHPD SNISGSEAIQ RSDDITIDST VTDKRRGKGP LLMDTDQKTD DSATSKSRFS RKLTERQILS GKTVPRKHCI VSPSVSEDGD 1301: NGSKPKKQHV ETFAKELVMT SDEASFKNRR LPKGYFYVPV DCLQEDKPGN QKLASSDKPA NQKTSSGDQS GKDDG |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)