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AT1G77710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.620
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Ubiquitin-like, Ufm1 (InterPro:IPR005375); Has 244 Blast hits to 244 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 149; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 48 (source: NCBI BLink).
Protein Annotations
BioGrid:29326eggNOG:ENOG4111TVIeggNOG:KOG3483EMBL:AC012193EMBL:AY093089EMBL:BT000097EMBL:CP002684
EnsemblPlants:AT1G77710EnsemblPlants:AT1G77710.1entrez:844107GeneID:844107Genevisible:Q9CA23Gramene:AT1G77710.1hmmpanther:PTHR15825
HOGENOM:HOG000238677InParanoid:Q9CA23IntAct:Q9CA23InterPro:IPR005375InterPro:IPR029071KEGG:ath:AT1G77710KO:K12162
OMA:RFACEQFPaxDb:Q9CA23Pfam:PF03671Pfam:Q9CA23PhylomeDB:Q9CA23PIR:H96806PIRSF:PIRSF038027
PRIDE:Q9CA23PRO:PR:Q9CA23ProteinModelPortal:Q9CA23Proteomes:UP000006548RefSeq:NP_177894.1SMR:Q9CA23STRING:3702.AT1G77710.1
SUPFAM:SSF54236TAIR:AT1G77710UniGene:At.34416UniProt:Q9CA23
Coordinates (TAIR10) chr1:+:29206750..29207895
Molecular Weight (calculated) 9929.08 Da
IEP (calculated) 10.03
GRAVY (calculated) 0.09
Length 93 amino acids
Sequence (TAIR10)
(BLAST)
1: MATGGKVSFK VTLTSDPKLP FKVFSVPEGA PFTAVLKFAA EEFKVPPQTS AIITNDGIGI NPQQSAGNVF LKHGSELRLI PRDRVGAVFV MDP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)