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AT1G77690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.733
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : like AUX1 3
Curator
Summary (TAIR10)
Encodes an auxin influx carrier LAX3 (Like Aux1) that promotes lateral root emergence. Auxin-induced expression of LAX3 in turn induces a selection of cell-wall-remodelling enzymes, which are likely to promote cell separation in advance of developing lateral root primordia.
Computational
Description (TAIR10)
like AUX1 3 (LAX3); CONTAINS InterPro DOMAIN/s: Amino acid transporter, transmembrane (InterPro:IPR013057); BEST Arabidopsis thaliana protein match is: like AUXIN RESISTANT 2 (TAIR:AT2G21050.1); Has 1212 Blast hits to 1207 proteins in 154 species: Archae - 0; Bacteria - 0; Metazoa - 167; Fungi - 294; Plants - 716; Viruses - 0; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
BioGrid:29324eggNOG:COG0814eggNOG:KOG1303EMBL:AC012193EMBL:AY054266EMBL:AY127575EMBL:BT008300
EMBL:CP002684EnsemblPlants:AT1G77690EnsemblPlants:AT1G77690.1entrez:844105GeneID:844105Genevisible:Q9CA25GO:GO:0003333
GO:GO:0005886GO:GO:0009733GO:GO:0009734GO:GO:0009926GO:GO:0010311GO:GO:0010328GO:GO:0015171
GO:GO:0015293GO:GO:0016021GO:GO:0048829GO:GO:0060919Gramene:AT1G77690.1hmmpanther:PTHR22950hmmpanther:PTHR22950:SF3
HOGENOM:HOG000238482InParanoid:Q9CA25InterPro:IPR013057KEGG:ath:AT1G77690KO:K13946OMA:PSFLGGWPaxDb:Q9CA25
Pfam:PF01490Pfam:Q9CA25PhylomeDB:Q9CA25PIR:F96806PRIDE:Q9CA25PRO:PR:Q9CA25ProteinModelPortal:Q9CA25
Proteomes:UP000006548RefSeq:NP_177892.1STRING:3702.AT1G77690.1TAIR:AT1G77690tair10-symbols:LAX3TMHMM:TMhelixUniGene:At.17772
UniProt:Q9CA25
Coordinates (TAIR10) chr1:-:29201232..29203317
Molecular Weight (calculated) 53308.30 Da
IEP (calculated) 9.15
GRAVY (calculated) 0.39
Length 470 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAEKIETVV AGNYLEMERE EENISGNKKS STKTKLSNFF WHGGSVYDAW FSCASNQVAQ VLLTLPYSFS QLGMMSGILF QLFYGLMGSW TAYLISVLYV
101: EYRTRKEREK FDFRNHVIQW FEVLDGLLGK HWRNLGLIFN CTFLLFGSVI QLIACASNIY YINDKLDKRT WTYIFGACCA TTVFIPSFHN YRIWSFLGLA
201: MTTYTSWYLT IASLLHGQAE DVKHSGPTTM VLYFTGATNI LYTFGGHAVT VEIMHAMWKP QKFKAIYLLA TIYVLTLTLP SASAVYWAFG DKLLTHSNAL
301: SLLPKTGFRD TAVILMLIHQ FITFGFASTP LYFVWEKLIG VHETKSMFKR AMARLPVVVP IWFLAIIFPF FGPINSAVGS LLVSFTVYII PALAHMLTFA
401: PAPSRENAVE RPPRVVGGWM GTYCINIFVV VWVFVVGFGF GGWASMVNFV RQIDTFGLFT KCYQCPPHKP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)