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AT1G77680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.932
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribonuclease II/R family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribonuclease II/R family protein; FUNCTIONS IN: ribonuclease activity, RNA binding; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease II/R (InterPro:IPR001900); BEST Arabidopsis thaliana protein match is: ribonuclease II family protein (TAIR:AT2G17510.1); Has 8235 Blast hits to 8065 proteins in 2328 species: Archae - 43; Bacteria - 5411; Metazoa - 476; Fungi - 391; Plants - 139; Viruses - 2; Other Eukaryotes - 1773 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1809-MONOMEReggNOG:COG0557eggNOG:KOG2102EMBL:AC010704EMBL:AC012193EMBL:AK221895EMBL:AK229034
EMBL:CP002684EnsemblPlants:AT1G77680EnsemblPlants:AT1G77680.1entrez:844104GeneID:844104Genevisible:Q0WPN0GO:GO:0000175
GO:GO:0000932GO:GO:0003723GO:GO:0006364GO:GO:0006402GO:GO:0010587GO:GO:0016075GO:GO:0034427
GO:GO:0046872GO:GO:0090503GO:GO:1990074Gramene:AT1G77680.1HAMAP:MF_03045hmmpanther:PTHR23355hmmpanther:PTHR23355:SF9
HOGENOM:HOG000030596InterPro:IPR012340InterPro:IPR022966InterPro:IPR028591iPTMnet:Q0WPN0KEGG:ath:AT1G77680KO:K18758
OMA:MRATGEHPaxDb:Q0WPN0Pfam:PF00773Pfam:Q0WPN0PhylomeDB:Q0WPN0PIR:E96806PRIDE:Q0WPN0
PRO:PR:Q0WPN0PROSITE:PS01175ProteinModelPortal:Q0WPN0Proteomes:UP000006548RefSeq:NP_177891.1scanprosite:PS01175SMR:Q0WPN0
STRING:3702.AT1G77680.1SUPFAM:SSF50249TAIR:AT1G77680UniGene:At.22476UniProt:Q0WPN0
Coordinates (TAIR10) chr1:-:29192188..29195963
Molecular Weight (calculated) 116849.00 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.35
Length 1055 amino acids
Sequence (TAIR10)
(BLAST)
0001: MKSASSEQSV ERIENGHKKK RNRPQKQNRR SKQSSVPIED AHVEESLDGR DSSRSKAKDS TSSSKQQRPN TDELEAMRAS NVAFNSMPPM RAESGYPRRS
0101: ASPLLSSPEV SKQLLSKSCP DPRACEQSPG MNGELFQQIE GSSQRKIFSS HWSLDAVTEA LEKGEAFKAL FRVNAHNRNE AYCKIDGVPT DILINGNVCQ
0201: SRAVEGDTVV IKLDPLSLWP KMKGFVTESA AKPEGTNSPP EKDDKKARQK NGIDVVEGFE DGFSKNKSSV IGKGAKNGVT PSSPPSLDSC LGSFCEQKGN
0301: CSAVDKLCGI LSSFPHKRPT GQVVAVVEKS LVRDSIVGLL DVKGWIHYKE SDPKRCKSPL SLSDDEYVQL MPADPRFPKL IVPFHVLPGS IRARLENLDP
0401: NLEAELVAAQ IVDWGEGSPF PVAQITHLFG RGSELEPQIN AILYQNSVCD SDFSPGSLTS LPRVPWEVPE EEVQRRKDLR DLCVLTIDPS TATDLDDALS
0501: VQSLPGGFFR VGVHIADVSY FVLPETALDT EARFRSTSVY LMQRKISMLP PLLSENVGSL SPGADRLAFS ILWDLNREGD VIDRWIGRTI IRSCCKLSYD
0601: HAQDIIDGKS DVAENGWPAL HGSFKWCDVT RSVKQLSEIS TTLRQKRFRN GALQLENSKP VFLFDEHGVP YDFVTCSRKG SNFLVEEFML LANMTAAEVI
0701: SQAYRASSLL RRHPEPNTRK LKEFEGFCSK HGMDLDISSS GQLQDSLEKI TGNLKDDSVF VDILNNYAIK PMQLASYFCT GNLKDSVAEW GHYALAVPLY
0801: THFTSPLRRY PDIVVHRALA AALEAEELYS KQKQTAIDEG RSCFTGIHFN KDAAESIEGK EALSVAALKH GVPSTEILSD VAAYCNERKL AARKVRDACD
0901: KLYTWFVLKQ KEIFPCEARV MNLGSRFMTV YISKLGIERR IYYDQIEGLC ADWLEATSTL IVDKLYSKRG GRGFFKPMKE AVYLVSPCEV CVAKCSALSV
1001: HDTESPEAVS IDEVAPAVFP LTIQLFSTIP VVLHAVGGDD GPLDIGARLY MSSYY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)