AT1G77550.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:peroxisome 0.545 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : tubulin-tyrosine ligases;tubulin-tyrosine ligases | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
tubulin-tyrosine ligases;tubulin-tyrosine ligases; FUNCTIONS IN: tubulin-tyrosine ligase activity; INVOLVED IN: protein modification process; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Tubulin-tyrosine ligase (InterPro:IPR004344); Has 1977 Blast hits to 1869 proteins in 143 species: Archae - 0; Bacteria - 8; Metazoa - 1192; Fungi - 29; Plants - 92; Viruses - 0; Other Eukaryotes - 656 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr1:-:29138490..29142965 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97548.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.57 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||||||||||||||||||||||
| Length | 855 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSKIESFDDF VKVHGILLAA SGLPPKLYPR LFEKLAYDTF DGGDYFQIES CEDDQRRKLL LTAESMPKDS DVFLVDHAWT FRLPDAYKQL KEIPGLAERM 101: ASLMSVDIDV DAGEEEVAEE LSVDQIIDNE IRYAADKGYD SLRWLELEGL GVDDSLLSLH LPSKFQDLVA LSLIGNKIES ADVVIQEIVK FKNLKALWLN 201: DNPVLQKSER QMADEILQGC PSLEIYNSCF TPNYGLWALG FCGDIFGKDN PGCVQQDQPL CNVTSLDLSN RSIHNLVNKA FSVHEMPLLS HLNIRGNSLD 301: QNSVGELLEV LKLFPSLSSL EVDIPGPLGI NALEILESLS NLSLLNGVDT AKILETGKHV VDSMLQPRIP ELNPDDTLVD RVLDAMWLYA LNYRLADDEK 401: LDETSLWYVM DELGSALRHS DEPNFKVAPF LFMPSGKLES AVSYSVMWPI KHSQKGDECT RDFLSGIGED KQRSARLTAW FQTPENYFIH EFEKYQQKLQ 501: AKAFESKPSN PSVSRSIQHS DGSPLLVYTD LPQVEEFLTR PEFVITNEPK DADILWTSVQ VDDELKKEVG ITDDQYINQF PFEACLVMKH HLAETIQMGY 601: GSPKWLQPTY NLETQLSQFI GDYCVRKRDQ LNNLWILKPW NMARTIDTSI TDNLSAIIRM METGPKICQK YIEHPALFKG NKFDLRYVVL VRSIDPLEIY 701: LIEIFWVRLS NNPYSLEKHS FFEYETHFTV MNYGRKLNHK PTAEFVREFE QEHNVKWMDI HEKVKQVIRA VFEAAALAHP EMQSPKSRAM YGVDVMLDSS 801: FEPKILEVTY CPDCMRACKY DMETIDGKGI VKGGDFFNNV FGCLFLDETA HVTPL |
||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)