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AT1G77490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : thylakoidal ascorbate peroxidase
Curator
Summary (TAIR10)
Encodes a chloroplastic thylakoid ascorbate peroxidase tAPX. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational
Description (TAIR10)
thylakoidal ascorbate peroxidase (TAPX); FUNCTIONS IN: L-ascorbate peroxidase activity; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: stromal ascorbate peroxidase (TAIR:AT4G08390.2); Has 7809 Blast hits to 7730 proteins in 1256 species: Archae - 55; Bacteria - 2313; Metazoa - 5; Fungi - 620; Plants - 3345; Viruses - 0; Other Eukaryotes - 1471 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G77490-MONOMERBRENDA:1.11.1.11EC:1.11.1.11eggNOG:COG0376eggNOG:ENOG410IG24EMBL:AC010704EMBL:AK229693
EMBL:AY085554EMBL:CP002684EMBL:X98926EnsemblPlants:AT1G77490EnsemblPlants:AT1G77490.1entrez:844085GeneID:844085
Genevisible:Q42593GO:GO:0006979GO:GO:0009507GO:GO:0009534GO:GO:0009535GO:GO:0009579GO:GO:0009631
GO:GO:0010019GO:GO:0016021GO:GO:0016688GO:GO:0020037GO:GO:0042744GO:GO:0046872GO:GO:0071588
Gramene:AT1G77490.1hmmpanther:PTHR31356hmmpanther:PTHR31356:SF1HOGENOM:HOG000189824InParanoid:Q42593InterPro:IPR002016InterPro:IPR002207
InterPro:IPR010255InterPro:IPR019793KEGG:ath:AT1G77490KO:K00434OMA:LRTKFCHPaxDb:Q42593PeroxiBase:1889
Pfam:PF00141Pfam:Q42593Pfscan:PS50873PhylomeDB:Q42593PIR:C96804PRIDE:Q42593PRINTS:PR00458
PRINTS:PR00459PRO:PR:Q42593PROSITE:PS00435PROSITE:PS50873ProteinModelPortal:Q42593Proteomes:UP000006548RefSeq:NP_177873.1
scanprosite:PS00435SMR:Q42593STRING:3702.AT1G77490.1SUPFAM:SSF48113TAIR:AT1G77490tair10-symbols:TAPXTMHMM:TMhelix
UniGene:At.25463UniProt:Q42593
Coordinates (TAIR10) chr1:+:29117688..29120046
Molecular Weight (calculated) 46094.60 Da
IEP (calculated) 7.32
GRAVY (calculated) -0.28
Length 426 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVSLSAASH LLCSSTRVSL SPAVTSSSSS PVVALSSSTS PHSLGSVASS SLFPHSSFVL QKKHPINGTS TRMISPKCAA SDAAQLISAK EDIKVLLRTK
101: FCHPILVRLG WHDAGTYNKN IEEWPLRGGA NGSLRFEAEL KHAANAGLLN ALKLIQPLKD KYPNISYADL FQLASATAIE EAGGPDIPMK YGRVDVVAPE
201: QCPEEGRLPD AGPPSPADHL RDVFYRMGLD DKEIVALSGA HTLGRARPDR SGWGKPETKY TKTGPGEAGG QSWTVKWLKF DNSYFKDIKE KRDDDLLVLP
301: TDAALFEDPS FKNYAEKYAE DVAAFFKDYA EAHAKLSNLG AKFDPPEGIV IENVPEKFVA AKYSTGKKEL SDSMKKKIRA EYEAIGGSPD KPLPTNYFLN
401: IIIAIGVLVL LSTLFGGNNN SDFSGF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)