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AT1G77400.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.984
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G21695.1); Has 328 Blast hits to 314 proteins in 61 species: Archae - 0; Bacteria - 12; Metazoa - 130; Fungi - 28; Plants - 92; Viruses - 10; Other Eukaryotes - 56 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J41BeggNOG:ENOG4111D7MEMBL:AC078898EMBL:AK176875EMBL:AK228061EMBL:BT004780EMBL:CP002684
EnsemblPlants:AT1G77400EnsemblPlants:AT1G77400.1entrez:844076GeneID:844076Gramene:AT1G77400.1hmmpanther:PTHR35466hmmpanther:PTHR35466:SF2
HOGENOM:HOG000090634IntAct:Q9FVW9InterPro:IPR007789KEGG:ath:AT1G77400OMA:METMSPWPfam:PF05097PhylomeDB:Q9FVW9
PIR:B96803Proteomes:UP000006548RefSeq:NP_177864.1STRING:3702.AT1G77400.1TAIR:AT1G77400UniGene:At.34481UniProt:Q9FVW9
Coordinates (TAIR10) chr1:+:29085881..29086579
Molecular Weight (calculated) 25935.60 Da
IEP (calculated) 11.53
GRAVY (calculated) -0.76
Length 232 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIIDVDDSF KRPGTIPFSW EIRPGVPKTR MSQPGNTTPL QPPKKLSPLR FKPLSHSQPL LPPALSPPSS SFISNSKSRP LSPLTPHSFS TTPSKLKPPR
101: TPSSLSGFYS PGPSFRSSPR AFSERWQLHR PNRIRPESEP EPSSDFSVAG FGCFPSPKFR LRKVKSGGSR RKSGSRSEND YYCSDMETMS PWTVSSRRSV
201: SPRWESPKSS FSSLRFSPRF ANEAEWVGFG LF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)