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AT1G77270.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07730.1); Has 428 Blast hits to 388 proteins in 92 species: Archae - 0; Bacteria - 31; Metazoa - 189; Fungi - 10; Plants - 97; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2QQeggNOG:ENOG410YUAKEMBL:AY074315EMBL:AY096420
EMBL:CP002684EnsemblPlants:AT1G77270EnsemblPlants:AT1G77270.1entrez:844063
GeneID:844063Gramene:AT1G77270.1hmmpanther:PTHR34194hmmpanther:PTHR34194:SF3
KEGG:ath:AT1G77270OMA:ESQTIFRPhylomeDB:Q8VY02Proteomes:UP000006548
RefSeq:NP_177851.2TAIR:AT1G77270UniGene:At.34515UniProt:Q8VY02
Coordinates (TAIR10) chr1:+:29028342..29031068
Molecular Weight (calculated) 77492.10 Da
IEP (calculated) 9.83
GRAVY (calculated) -0.84
Length 682 amino acids
Sequence (TAIR10)
(BLAST)
001: MKRKPKKSAW LKTIAKKEII EIESDTDTDD EVAATKLAPF GEENAKSSVK MEIKTESNID EVCGKMMDLC VERNASKDDA LAKKNPKKSA VAKTILNKEI
101: IEIESDTDTD EVGPRKLPLC NEENASGDDV LAKNPKKCSV AKTIVKKEIK IESNIDELGG RLLVNASGDD VLAKKPKKSV VAKTIVWQEI IEIESATDTD
201: TDEVGGKTLS LCGKVDASGD DLLARDGKTK RTNLQIVCVD DCDSGLVHDL EYKKYLAHFS ETRNVYLLED NVRGSSPVRI MYHEAPDRSL RKAVETEKSK
301: AGRKPKSPTI SSVSKRLKTE DGRADHKSIS RTVLRTKETQ QKKGDDVRRG RSSIEVKPRS YVRDTKERNG DARRGRKISV AKNTIESKPT RYVRDSQEKN
401: TRNDESQTIF RASKRLKTEI GRADHNSISK TNPVVKTKDI QRKNREALRG RKIHVTKHNN ESKSRGHVID NLFHSFKPSK KENEMSLSSV EKSYSYYTAF
501: LRNSIRNSVT IFNSGQQVKP MKDAVCLSDP DIIAVSNHPF PDGGKSPFEA TKDGKVIDLE DGIKPDDIFN SSFSKKLMEI LRNPYDEKEF LRLYNEASVK
601: RPLTKSRQLR DGREIEYYCD DQFALSYLEK YTDFNKTYHR YRKDLPRALN LLRGFFFYLE NIVLEGAFKP WLHEKRLTKF VC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)