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AT1G77230.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.583
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: petal differentiation and expansion stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G08320.1); Has 1613 Blast hits to 1438 proteins in 361 species: Archae - 117; Bacteria - 321; Metazoa - 455; Fungi - 164; Plants - 198; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IMN5eggNOG:ENOG4111N4CEMBL:AK175648EMBL:AK175665
EMBL:AY064038EMBL:BT010646EMBL:CP002684EnsemblPlants:AT1G77230
EnsemblPlants:AT1G77230.1entrez:844059Gene3D:1.25.40.10GeneID:844059
Gramene:AT1G77230.1hmmpanther:PTHR15544hmmpanther:PTHR15544:SF0HOGENOM:HOG000083341
InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734KEGG:ath:AT1G77230
ncoils:CoilOMA:LTWNKNPPfam:PF00515Pfam:PF13181
Pfam:PF13414Pfscan:PS50005Pfscan:PS50293PROSITE:PS50005
PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_177847.2SMART:SM00028
SMR:Q8VZL0STRING:3702.AT1G77230.1SUPFAM:SSF48452TAIR:AT1G77230
UniGene:At.34523UniProt:Q8VZL0
Coordinates (TAIR10) chr1:+:29016129..29017873
Molecular Weight (calculated) 24716.60 Da
IEP (calculated) 4.86
GRAVY (calculated) -0.89
Length 218 amino acids
Sequence (TAIR10)
(BLAST)
001: MKLTWNKNPK KRSRLVLSNF PDLPFEKDDS LESQSHLHFR EDDIDRRQTT DQLDSSEVGG NHPRENFDVE AKKLAESIRA QGDKFAEEGK YQEALGKWEA
101: ALNLVPEDAI LHEQKAQVLL ELGDAWKALK AATRATEIDP SWAEAWTTLG RAQLNFGEPD SAIRSFESAL LINADSREAK DDLKSAKQLI KKREQLQTSG
201: QDTDTTRFVV NDKNIEPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)