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AT1G77180.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : chromatin protein family
Curator
Summary (TAIR10)
Encodes a putative transcriptional factor. Shows transcriptional activator activity in yeast. Involved in response to abscisic acid, salt and osmotic stress.
Computational
Description (TAIR10)
SKIP; FUNCTIONS IN: transcription activator activity; INVOLVED IN: response to salt stress, response to mannitol stimulus, RNA splicing, response to abscisic acid stimulus; LOCATED IN: nucleolus, nucleus; EXPRESSED IN: 27 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: SKI-interacting protein, SKIP (InterPro:IPR017862), SKI-interacting protein SKIP, SNW domain (InterPro:IPR004015); Has 9534 Blast hits to 6488 proteins in 453 species: Archae - 14; Bacteria - 426; Metazoa - 4688; Fungi - 1154; Plants - 570; Viruses - 47; Other Eukaryotes - 2635 (source: NCBI BLink).
Protein Annotations
BioGrid:29274eggNOG:ENOG410XQGTeggNOG:KOG2441EMBL:AC004260
EMBL:AF386950EMBL:AK175914EMBL:AK176196EMBL:AK176338
EMBL:AK176413EMBL:AK176467EMBL:AK176837EMBL:AK221263
EMBL:AY058079EMBL:AY081520EMBL:CP002684EnsemblPlants:AT1G77180
EnsemblPlants:AT1G77180.1EnsemblPlants:AT1G77180.2EnsemblPlants:AT1G77180.3entrez:844055
ExpressionAtlas:O80653GeneID:844055Genevisible:O80653GO:GO:0000398
GO:GO:0005634GO:GO:0005681GO:GO:0005730GO:GO:0006351
GO:GO:0008380GO:GO:0009651GO:GO:0009737GO:GO:0010228
GO:GO:0010555GO:GO:0016607GO:GO:0042752GO:GO:0045893
GO:GO:0048511hmmpanther:PTHR12096HOGENOM:HOG000160386InParanoid:O80653
IntAct:O80653InterPro:IPR004015InterPro:IPR017862iPTMnet:O80653
KEGG:ath:AT1G77180KO:K06063ncoils:CoilOMA:QLDPMEP
PANTHER:PTHR12096PaxDb:O80653Pfam:O80653Pfam:PF02731
PhylomeDB:O80653PIR:T00448PRIDE:O80653PRO:PR:O80653
Proteomes:UP000006548RefSeq:NP_001031291.1RefSeq:NP_001185416.1RefSeq:NP_565151.1
STRING:3702.AT1G77180.1TAIR:AT1G77180tair10-symbols:SKIPUniGene:At.22662
UniGene:At.71064UniProt:O80653
Coordinates (TAIR10) chr1:-:28999791..29001632
Molecular Weight (calculated) 69426.50 Da
IEP (calculated) 9.75
GRAVY (calculated) -1.13
Length 613 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSLNDLPAP KSTTTTYYDH SNDAWFKNRV TESETVKSSS IKFKVVPAYL NRQGLRPKNP EDFGDGGAFP EIHLPQYPLL MGKNKSNKPG AKTLPVTVDA
101: QGNVVFDAIV RQNENSRKIV YSQHKDIIPK FLKNEGDLGT VVDEEEELQK EIQETAEETK AAIEKIVNVR LSAAQPSNIA RQSGDSQYIK YKPSQQSSAF
201: NSGAKERIIR MVEMPVDPLD PPKFKHKRVP RASGSPPVPV MHSPPRPVTV KDQQDWKIPP CISNWKNPKG YTIPLDKRLA ADGRGLQDVQ INDNFAKLSE
301: ALYVAEQKAR EAVSMRSKVQ KEMVMKDKER KEQELRALAQ KARSERTGAA MSMPVSSDRG RSESVDPRGD YDNYDQDRGR EREREEPQET REEREKRIQR
401: EKIREERRRE RERERRLDAK DAAMGKKSKI TRDRDRDISE KVALGMASTG GKGGGEVMYD QRLFNQDKGM DSGFAADDQY NLYDKGLFTA QPTLSTLYKP
501: KKDNDEEMYG NADEQLDKIK NTERFKPDKA FTGASERVGS KRDRPVEFEK EEEQDPFGLE KWVSDLKKGK KPLDKIGSGG TMRASGGGGS SSRDDDHGGS
601: GRTKINFERS DRR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)