suba logo
AT1G77145.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Protein of unknown function (DUF506)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF506) ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF506, plant (InterPro:IPR006502); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF506) (TAIR:AT1G77160.1); Has 392 Blast hits to 390 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 390; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXGTeggNOG:ENOG410Z333EMBL:AC004260EMBL:AY072091EMBL:AY096573EMBL:CP002684EnsemblPlants:AT1G77145
EnsemblPlants:AT1G77145.1entrez:844051GeneID:844051GO:GO:0005634Gramene:AT1G77145.1hmmpanther:PTHR31579hmmpanther:PTHR31579:SF14
HOGENOM:HOG000090478IntAct:O80651InterPro:IPR006502KEGG:ath:AT1G77145OMA:QMVHDFIPANTHER:PTHR31579Pfam:PF04720
PhylomeDB:O80651PIR:T00446Proteomes:UP000006548RefSeq:NP_683503.1TAIR:AT1G77145TIGRfam:TIGR01615TIGRFAMs:TIGR01615
UniGene:At.42701UniProt:O80651
Coordinates (TAIR10) chr1:-:28990178..28991290
Molecular Weight (calculated) 29925.80 Da
IEP (calculated) 8.96
GRAVY (calculated) -0.68
Length 260 amino acids
Sequence (TAIR10)
(BLAST)
001: MGSLGEEDLE KLVLDYIESP ITVSQHIESS TTALITLKEI LRAKGEKEKE MEEKIWSFIN GGRLSYEGDD EKRDVMNKIV SKLRSEGYDA SLSKTSWDSS
101: FDHREGCRVF RCSRKYEYID VMVKGDSNRD GVSKLKRVII DLDFKTQFEL ARQTEAYKDM TEMLPLVFVA TEGRLRRVVS LVCGEMKKSM KKEGMSRPPW
201: RTTRYMQSKW LPENRRRVSG CKKGSWSWSV FDDGSEGRGE ARTWTVSGSG PKTKCCFPIF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)