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AT1G77140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : vacuolar protein sorting 45
Curator
Summary (TAIR10)
A peripheral membrane protein that associates with microsomal membranes, likely to function in the transport of proteins to the vacuole. It is a member of Sec1p protein family. It may be involved in the regulation of vesicle fusion reactions through interaction with t-SNAREs at the Golgi trans face.
Computational
Description (TAIR10)
vacuolar protein sorting 45 (VPS45); CONTAINS InterPro DOMAIN/s: Sec1-like protein (InterPro:IPR001619); BEST Arabidopsis thaliana protein match is: secretory 1A (TAIR:AT1G02010.1); Has 1795 Blast hits to 1777 proteins in 228 species: Archae - 0; Bacteria - 2; Metazoa - 694; Fungi - 525; Plants - 216; Viruses - 0; Other Eukaryotes - 358 (source: NCBI BLink).
Protein Annotations
BioGrid:29269eggNOG:COG5158eggNOG:KOG1299EMBL:AC004260EMBL:AF036234EMBL:AY050370EMBL:AY101517
EMBL:CP002684EnsemblPlants:AT1G77140EnsemblPlants:AT1G77140.1entrez:844050Gene3D:3.40.50.1910GeneID:844050Genevisible:O49048
GO:GO:0005802GO:GO:0006886GO:GO:0006904GO:GO:0009705Gramene:AT1G77140.1hmmpanther:PTHR11679hmmpanther:PTHR11679:SF3
HOGENOM:HOG000200803InParanoid:O49048IntAct:O49048InterPro:IPR001619InterPro:IPR027482iPTMnet:O49048KEGG:ath:AT1G77140
KO:K12479OMA:QFKHTKSPANTHER:PTHR11679PaxDb:O49048Pfam:O49048Pfam:PF00995PhylomeDB:O49048
PIR:T00445PIR:T52056PIRSF:PIRSF005715PRIDE:O49048PRO:PR:O49048ProteinModelPortal:O49048Proteomes:UP000006548
RefSeq:NP_565150.1SMR:O49048STRING:3702.AT1G77140.1SUPFAM:SSF56815TAIR:AT1G77140tair10-symbols:ATVPS45tair10-symbols:VPS45
UniGene:At.10764UniProt:O49048
Coordinates (TAIR10) chr1:+:28984163..28987681
Molecular Weight (calculated) 64946.00 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.31
Length 569 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLVTSVRDY INRMLQDISG MKVLILDSET VSNVSIVYSQ SELLQKEVFL VEMIDSISVS KESMSHLKAV YFIRPTSDNI QKLRYQLANP RFGEYHLFFS
101: NLLKDTQIHI LADSDEQEVV QQVQEYYADF VSGDPYHFTL NMASNHLYMI PAVVDPSGLQ RFSDRVVDGI AAVFLALKRR PVIRYQRTSD TAKRIAHETA
201: KLMYQHESAL FDFRRTESSP LLLVIDRRDD PVTPLLNQWT YQAMVHELIG LQDNKVDLKS IGSLPKDQQV EVVLSSEQDA FFKSNMYENF GDIGMNIKRM
301: VDDFQQVAKS NQNIQTVEDM ARFVDNYPEY KKMQGNVSKH VTLVTEMSKL VEARKLMTVS QTEQDLACNG GQGAAYEAVT DLLNNESVSD IDRLRLVMLY
401: ALRYEKENPV QLMQLFNKLA SRSPKYKPGL VQFLLKQAGV EKRTGDLFGN RDLLNIARNM ARGLKGVENV YTQHQPLLFQ TMESITRGRL RDVDYPFVGD
501: HFQQGRPQEV VIFMVGGTTY EESRSVALQN ATNSGVRFIL GGTAVLNSKR FLKDLEEAQR ISRSGSHMV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)