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AT1G77110.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
ASURE: plasma membrane
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23551385 (2013): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Auxin efflux carrier family protein
Curator
Summary (TAIR10)
Rate-limiting factor in saturable efflux of auxins. PINs are directly involved of in catalyzing cellular auxin efflux.
Computational
Description (TAIR10)
PIN-FORMED 6 (PIN6); FUNCTIONS IN: auxin:hydrogen symporter activity, transporter activity; INVOLVED IN: auxin polar transport; LOCATED IN: plasma membrane; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Auxin efflux carrier, subgroup (InterPro:IPR014024), Auxin efflux carrier (InterPro:IPR004776); BEST Arabidopsis thaliana protein match is: Auxin efflux carrier family protein (TAIR:AT2G01420.1); Has 1564 Blast hits to 1346 proteins in 434 species: Archae - 34; Bacteria - 892; Metazoa - 10; Fungi - 0; Plants - 502; Viruses - 0; Other Eukaryotes - 126 (source: NCBI BLink).
Protein Annotations
BioGrid:29265eggNOG:ENOG410IIEReggNOG:ENOG410YC3KEMBL:AC002291EMBL:AF087819EMBL:CP002684EnsemblPlants:AT1G77110
EnsemblPlants:AT1G77110.1entrez:844046GeneID:844046Genevisible:Q9SQH6GO:GO:0005783GO:GO:0005886GO:GO:0009734
GO:GO:0009926GO:GO:0010105GO:GO:0010252GO:GO:0010315GO:GO:0010329GO:GO:0010540GO:GO:0016021
GO:GO:0048767GO:GO:1901332Gramene:AT1G77110.1hmmpanther:PTHR31752hmmpanther:PTHR31752:SF8HOGENOM:HOG000238224InParanoid:Q9SQH6
InterPro:IPR004776InterPro:IPR014024iPTMnet:Q9SQH6KEGG:ath:AT1G77110KO:K13947OMA:CAMAPLYPaxDb:Q9SQH6
Pfam:PF03547Pfam:Q9SQH6PhylomeDB:Q9SQH6PIR:A96800PRIDE:Q9SQH6PRO:PR:Q9SQH6ProteinModelPortal:Q9SQH6
Proteomes:UP000006548RefSeq:NP_177836.1STRING:3702.AT1G77110.1TAIR:AT1G77110tair10-symbols:PIN6TIGRfam:TIGR00946TIGRFAMs:TIGR00946
TMHMM:TMhelixUniGene:At.11574UniProt:Q9SQH6
Coordinates (TAIR10) chr1:+:28970855..28974408
Molecular Weight (calculated) 62047.40 Da
IEP (calculated) 9.48
GRAVY (calculated) 0.36
Length 570 amino acids
Sequence (TAIR10)
(BLAST)
001: MITGNEFYTV MCAMAPLYFA MFVAYGSVKW CKIFTPAQCS GINRFVSVFA VPVLSFHFIS QNNPYKMDTM FILADTLSKI FVFVLLSLWA VFFKAGGLDW
101: LITLFSIATL PNTLVMGIPL LQAMYGDYTQ TLMVQLVVLQ CIIWYTLLLF LFELRAARLL IRAEFPGQAA GSIAKIQVDD DVISLDGMDP LRTETETDVN
201: GRIRLRIRRS VSSVPDSVMS SSLCLTPRAS NLSNAEIFSV NTPNNRFFHG GGGSGTLQFY NGSNEIMFCN GDLGGFGFTR PGLGASPRRL SGYASSDAYS
301: LQPTPRASNF NELDVNGNGT PVWMKSPAAG RIYRQSSPKM MWESGQRHAA KDINGSVPEK EISFRDALKA APQATAAGGG ASMEEGAAGK DTTPVAAIGK
401: QEMPSAIVMM RLILTVVGRK LSRNPNTYSS LLGLVWSLIS FKWNIPMPNI VDFSIKIISD AGLGMAMFSL GLFMALQPKM IPCGAKKATM GMLIRFISGP
501: LFMAGASLLV GLRGSRLHAA IVQAALPQGI VPFVFAREYN LHPDLLSTLV IFGMIVSLPV TILYYVLLGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)