AT1G77010.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT2G13600.1); Has 48292 Blast hits to 13963 proteins in 224 species: Archae - 0; Bacteria - 0; Metazoa - 112; Fungi - 57; Plants - 47549; Viruses - 0; Other Eukaryotes - 574 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:+:28942710..28944797 | ||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 77878.80 Da | ||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.73 | ||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||
Length | 695 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MILKYNSSYR FYLSSSFLQA MEVDCRRYYV RLLQSCSSRN RETLWRQTNG LLLKKGFLSS IVIVANHLLQ MYSRSGKMGI ARNLFDEMPD RNYFSWNTMI 101: EGYMNSGEKG TSLRFFDMMP ERDGYSWNVV VSGFAKAGEL SVARRLFNAM PEKDVVTLNS LLHGYILNGY AEEALRLFKE LNFSADAITL TTVLKACAEL 201: EALKCGKQIH AQILIGGVEC DSKMNSSLVN VYAKCGDLRM ASYMLEQIRE PDDHSLSALI SGYANCGRVN ESRGLFDRKS NRCVILWNSM ISGYIANNMK 301: MEALVLFNEM RNETREDSRT LAAVINACIG LGFLETGKQM HCHACKFGLI DDIVVASTLL DMYSKCGSPM EACKLFSEVE SYDTILLNSM IKVYFSCGRI 401: DDAKRVFERI ENKSLISWNS MTNGFSQNGC TVETLEYFHQ MHKLDLPTDE VSLSSVISAC ASISSLELGE QVFARATIVG LDSDQVVSSS LIDLYCKCGF 501: VEHGRRVFDT MVKSDEVPWN SMISGYATNG QGFEAIDLFK KMSVAGIRPT QITFMVVLTA CNYCGLVEEG RKLFESMKVD HGFVPDKEHF SCMVDLLARA 601: GYVEEAINLV EEMPFDVDGS MWSSILRGCV ANGYKAMGKK AAEKIIELEP ENSVAYVQLS AIFATSGDWE SSALVRKLMR ENNVTKNPGS SWTDC |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)