AT1G76850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 ASURE: plasma membrane What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : exocyst complex component sec5 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the exocyst complex gene family. The exocyst is a protein complex involved in tethering vesicles to the plasma membrane during regulated or polarized secretion. | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
exocyst complex component sec5 (SEC5A); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: pollen germination, pollen tube growth; LOCATED IN: cytosol, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: Exocyst complex component SEC5 (TAIR:AT1G21170.1); Has 532 Blast hits to 503 proteins in 167 species: Archae - 0; Bacteria - 2; Metazoa - 234; Fungi - 147; Plants - 83; Viruses - 4; Other Eukaryotes - 62 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28848013..28854282 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 121908.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.53 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1090 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MSSDSNDLDE DELLQMALKE QAKRDLTYQK PPSSSARKPV ANLVQQPRQQ KPVAAAAAPP KKSAAAVRKP SMDEDEESEV ELLSISSGDD DLEREREIGG 0101: SSGGAGRGRG SDVREKGRAR KEDDGAWDGG EPDCWKRVNE AELARRVRDM RESRTAPVVQ KVEGKAPAPG KKVALTSLQS LPRGMECIDP LKLGIIDNKT 0201: LRLITESSGS PSKAEKVDNT LREKLVYFSD HFDPKLFLSR IHQDTTAADL EAGALGLKSD LKGRNLQRKQ LVKDNFDCFV SCKTTIDDIE SKLKRIEEDP 0301: EGSGTTHLFN CMKSVTSRAN LAFEPLFERQ AQAEKIRSVQ GMLQRFRTLF NLPSIIRSSI SKGEYDLAVR EYKKAKSIAL PSHVNILKRV LEEVEKVMLE 0401: FKGTLYKSME DPKIDFTSLE NTVRLLLELE PESDPVWHYL NVQNHRIHGL LEKCTYDHEA RVEILRNDTH EKAISDAKWQ QIQQNGVSYS DTASSNENNA 0501: VQVDLQSVEF PSEEIDILKG RYIKRLTAVL VHHIPVFWKT AISIFSGKFA KSSQVTDTSA NKAEEKVTEA RYSTHSLEEV AGMIRKTISV YEAKVNSTFC 0601: DFDESCILRP FMSDAINEVS KACQAFEAKE STPHSAVVAL RKIQAEITKI YIQRLCSWMR ASTEGISKEE TWIPVSILER NRSPYAISYL PLAFRSVIVS 0701: GMEQVNLMIL SVKSEAAKSE DMFAQIEEII ISVRLAFLNC FLDFAAHLEQ IGADLSQSTS RQDNWKNGYS DEHQEEPSAN TYGSVIDPHR RLLMVLSNIG 0801: YCKDELASEL YNKFKYTWLQ SRDKNEDSSD LQDLIMSFSG LGEKVLEHYT FAKANLIRTA ATNYLLDSGI QWGSAPQVKG IRDAAVELLH TLVAVHAEVF 0901: AGAKPLLDKI LGVLIEGLID TFLSVVEENR SSDLRSIDAN GFCQLMFELE YFETVLYSYF TSAATESLKS LQGTVLEIAI ESISEAVETP GHNRRPTRGS 1001: EDTVSDDKQS VSADDLLALT KQCSNELLQQ ELERTRVNTA CFAESAPLES TPPLPKATYS SFRGSMDSPS RNYRGSQSSG SPINARPRRR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)