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AT1G76760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:20061580 (2010): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : thioredoxin Y1
Curator
Summary (TAIR10)
Encodes a y-type thioredoxin (Trx-y1) localized in chloroplast stroma.
Computational
Description (TAIR10)
thioredoxin Y1 (TY1); FUNCTIONS IN: electron carrier activity, protein disulfide oxidoreductase activity; INVOLVED IN: glycerol ether metabolic process, cell redox homeostasis; LOCATED IN: chloroplast stroma; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin (InterPro:IPR005746), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin Y2 (TAIR:AT1G43560.1); Has 23491 Blast hits to 21806 proteins in 3039 species: Archae - 310; Bacteria - 12245; Metazoa - 3466; Fungi - 1226; Plants - 1976; Viruses - 18; Other Eukaryotes - 4250 (source: NCBI BLink).
Protein Annotations
BioGrid:29229eggNOG:COG0526eggNOG:KOG0910EMBL:AC010718EMBL:AK227422EMBL:BT010677EMBL:BT010965
EMBL:CP002684EnsemblPlants:AT1G76760EnsemblPlants:AT1G76760.1entrez:844010Gene3D:3.40.30.10GeneID:844010Genevisible:Q6NPF9
GO:GO:0000103GO:GO:0006457GO:GO:0006662GO:GO:0008047GO:GO:0009507GO:GO:0009570GO:GO:0015035
GO:GO:0016671GO:GO:0034599GO:GO:0043085GO:GO:0045454Gramene:AT1G76760.1hmmpanther:PTHR10438hmmpanther:PTHR10438:SF280
HOGENOM:HOG000292977InParanoid:Q6NPF9IntAct:Q6NPF9InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766InterPro:IPR017937
KEGG:ath:AT1G76760OMA:STTRCTPPANTHER:PTHR10438PaxDb:Q6NPF9Pfam:PF00085Pfam:Q6NPF9Pfscan:PS51352
PhylomeDB:Q6NPF9PIR:B96796PRIDE:Q6NPF9PRO:PR:Q6NPF9PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:Q6NPF9
Proteomes:UP000006548RefSeq:NP_177802.2scanprosite:PS00194SMR:Q6NPF9STRING:3702.AT1G76760.1SUPFAM:SSF52833TAIR:AT1G76760
tair10-symbols:ATY1tair10-symbols:TRX-Y1tair10-symbols:TY1TIGRfam:TIGR01068TIGRFAMs:TIGR01068UniGene:At.34618UniGene:At.72900
UniProt:Q6NPF9
Coordinates (TAIR10) chr1:-:28811873..28812948
Molecular Weight (calculated) 19251.20 Da
IEP (calculated) 9.21
GRAVY (calculated) -0.24
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MASISLSSST VPSLNSKESS GVSAFASRSI SAVKFQFPVR RVRTGDLKFP SLSSTTRCTP RRIEAKKQTF DSFEDLLVNS DKPVLVDYYA TWCGPCQFMV
101: PILNEVSETL KDKIQVVKID TEKYPSIANK YKIEALPTFI LFKDGEPCDR FEGALTAKQL IQRIEDSLKV KP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)