AT1G76660.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT5G52430.1); Has 353 Blast hits to 231 proteins in 60 species: Archae - 0; Bacteria - 6; Metazoa - 57; Fungi - 22; Plants - 125; Viruses - 4; Other Eukaryotes - 139 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:28769157..28771036 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 46432.20 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.90 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.75 | ||||||||||||||||||||||||||||||||||||
| Length | 431 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGSEQDQRKR WGGCLGVFSC FKSQKGGKRI VPASRIPEGG NVSASQPNGA HQAGVLNNQA AGGINLSLLA PPSSPASFTN SALPSTTQSP NCYLSLAANS 101: PGGPSSSMYA TGPYAHETQL VSPPVFSTFT TEPSTAPFTP PPELARLTAP SSPDVPYARF LTSSMDLKNS GKGHYNDLQA TYSLYPGSPA SALRSPISRA 201: SGDGLLSPQN GKCSRSDSGN TFGYDTNGVS TPLQESNFFC PETFAKFYLD HDPSVPQNGG RLSVSKDSDV YPTNGYGNGN QNRQNRSPKQ DMEELEAYRA 301: SFGFSADEII TTSQYVEITD VMDGSFNTSA YSPSDGQKLL RREANLLSQT SPKSEADLDS QVVDFQSPKS SNSYKDHKQR NRIHADEEAL LSRVGSVKGS 401: RSYHISSSDA EVEYRRGRSL RESRENRHRK A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)