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AT1G76620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function, DUF547
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function, DUF547; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT1G21060.1); Has 866 Blast hits to 747 proteins in 129 species: Archae - 0; Bacteria - 108; Metazoa - 79; Fungi - 87; Plants - 458; Viruses - 1; Other Eukaryotes - 133 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJH8eggNOG:ENOG410YF33EMBL:AK227157EMBL:AY060575EMBL:AY149945EMBL:CP002684EnsemblPlants:AT1G76620
EnsemblPlants:AT1G76620.1entrez:843995GeneID:843995Gramene:AT1G76620.1hmmpanther:PTHR23054hmmpanther:PTHR23054:SF15HOGENOM:HOG000242902
InterPro:IPR006869InterPro:IPR025757KEGG:ath:AT1G76620OMA:QKEIRQCPfam:PF04784Pfam:PF14389PhylomeDB:Q8W4R7
Proteomes:UP000006548RefSeq:NP_565137.1TAIR:AT1G76620UniGene:At.19674UniProt:Q8W4R7
Coordinates (TAIR10) chr1:+:28756787..28759131
Molecular Weight (calculated) 59171.40 Da
IEP (calculated) 9.42
GRAVY (calculated) -0.34
Length 527 amino acids
Sequence (TAIR10)
(BLAST)
001: MMALMNCAYS SSSSSSSTSS PTSSSSSSSY SPRNRESMFL QSVVDASPSS FSSDRKSILP IEKTLIRHQN SSLCLIPKSS EELKKEIASI EIEILHMERY
101: LLSLYRKSFE QQLPNSFSNL SVTTTLPRSV TTSPTSLTHY QAYQKPISYP RSFNTSLKAL SSREGTRVVS GTHSLGELLG SSHIVDHNNF INPNKLSEDI
201: MRCISSVYCT LSRGSTSTTS TCFPASPVSS NASTIFSSKF NYEDKWSLNG ASEDHFLNHC QDQDNVLPCG VVVIEALRVH LDDGSFGYAA LMLQNFRSLV
301: QNLEKVDPSR MKREEKLAFW INIHNALVMH AYLAYGTHNR ARNTSVLKAA YDIGGYRINP YIIQSSILGI RPHYTSPSPL LQTLFSPSRK SKTCSVRHIY
401: ALEYPEALAH FAISSGAFTD PTVRVYTADR IFRDLRQAKQ EYIRSNVRVY KGTKILLPKI FQHYVKDMSM DVSKLMEATS QCLPEDARKI AEKCLKEKKS
501: KNFEWLPENL SFRYVIAGEL VGARNKT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)