suba logo
AT1G76590.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
nucleus 0.951
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : PLATZ transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G21000.1); Has 404 Blast hits to 404 proteins in 27 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 402; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIEZeggNOG:ENOG410YCUAEMBL:BT024468EMBL:CP002684EnsemblPlants:AT1G76590EnsemblPlants:AT1G76590.1entrez:843992
GeneID:843992Gramene:AT1G76590.1hmmpanther:PTHR31065hmmpanther:PTHR31065:SF12HOGENOM:HOG000235045InterPro:IPR006734KEGG:ath:AT1G76590
OMA:YEGEWESPfam:PF04640PhylomeDB:Q2HIW3Proteomes:UP000006548RefSeq:NP_565135.1STRING:3702.AT1G76590.1TAIR:AT1G76590
UniGene:At.19392UniProt:Q2HIW3
Coordinates (TAIR10) chr1:+:28740875..28741894
Molecular Weight (calculated) 27781.30 Da
IEP (calculated) 8.75
GRAVY (calculated) -0.48
Length 245 amino acids
Sequence (TAIR10)
(BLAST)
001: MGPMMMRAEE DNYNLNPPPW LIPMLRANYF IPCSIHAASN KSECNMFCLD CSSEAFCSYC LLNHRNHRVL QIRRSSYHNV VRVNEIQKYI DISCVQTYII
101: NSARIVFLNE RPQPRIGKGV TNTCEICCRS LLDSFRFCSL GCKLGGMKRD PSLTFSLRGK HGREYEGEWE SDEATTPTKI RKTCAFNRLM SGLSISTVKC
201: DYLSGDQPSS SSGDESGFKL SPGTPPIYNH RNSSRRKGVP HRAPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)