AT1G76580.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 14 (TAIR:AT1G20980.1); Has 4275 Blast hits to 1172 proteins in 134 species: Archae - 0; Bacteria - 31; Metazoa - 161; Fungi - 128; Plants - 962; Viruses - 0; Other Eukaryotes - 2993 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28734600..28738451 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 109855.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.57 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 988 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGELPKDDWQ MNRWKWDGQR FEAIELQGES LQLSNKKGLD LNLPCGFNDV EGTPVDLTRP SKKVRSGSPG SGGGGGGNYP KCQVDNCKED LSIAKDYHRR 101: HKVCEVHSKA TKALVGKQMQ RFCQQCSRFH LLSEFDEGKR SCRRRLDGHN RRRRKTQPDA ITSQVVALEN RDNTSNNTNM DVMALLTALV CAQGRNEATT 201: NGSPGVPQRE QLLQILNKIK ALPLPMNLTS KLNNIGILAR KNPEQPSPMN PQNSMNGASS PSTMDLLAAL SASLGSSAPE AIAFLSQGGF GNKESNDRTK 301: LTSSDHSATT SLEKKTLEFP SFGGGERTSS TNHSPSQYSD SRGQDTRSSL SLQLFTSSPE EESRPKVASS TKYYSSASSN PVEDRSPSSS PVMQELFPLH 401: TSPETRRYNN YKDTSTSPRT SCLPLELFGA SNRGATANPN YNVLRHQSGY ASSGSDYSPP SLNSNAQERT GKISFKLFEK DPSQLPNTLR TEIFRWLSSF 501: PSDMESFIRP GCVILSVYVA MSASAWEQLE ENLLQRVRSL VQDSEFWSNS RFLVNAGRQL ASHKHGRIRL SKSWRTLNLP ELITVSPLAV VAGEETALIV 601: RGRNLTNDGM RLRCAHMGNY ASMEVTGREH RLTKVDELNV SSFQVQSASS VSLGRCFIEL ENGLRGDNFP LIIANATICK ELNRLEEEFH PKDVIEEQIQ 701: NLDRPRSREE VLCFLNELGW LFQRKWTSDI HGEPDFSLPR FKFLLVCSVE RDYCSLIRTV LDMMVERNLG KDGLLNKESL DMLADIQLLN RAIKRRNTKM 801: AETLIHYSVN PSTRNFIFLP SIAGPGDITP LHLAASTSSS DDMIDALTND PQEIGLSCWN TLVDATGQTP FSYAAMRDNH SYNTLVARKL ADKRNGQISL 901: NIENGIDQIG LSKRLSSELK RSCNTCASVA LKYQRKVSGS RRLFPTPIIH SMLAVATVCV CVCVFMHAFP MVRQGSHFSW GGLDYGSI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)