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AT1G76580.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, SBP-box (InterPro:IPR004333); BEST Arabidopsis thaliana protein match is: squamosa promoter binding protein-like 14 (TAIR:AT1G20980.1); Has 4275 Blast hits to 1172 proteins in 134 species: Archae - 0; Bacteria - 31; Metazoa - 161; Fungi - 128; Plants - 962; Viruses - 0; Other Eukaryotes - 2993 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIZ6eggNOG:ENOG4110DQFEMBL:AC015450EMBL:AJ242958EMBL:AJ630503EMBL:AY062670EMBL:AY568676
EMBL:BT006626EMBL:CP002684EnsemblPlants:AT1G76580EnsemblPlants:AT1G76580.1entrez:843991Gene3D:1.25.40.20Gene3D:4.10.1100.10
GeneID:843991Genevisible:Q700C2GO:GO:0003700GO:GO:0005634GO:GO:0005886GO:GO:0006351GO:GO:0006355
GO:GO:0044212GO:GO:0046872hmmpanther:PTHR31251hmmpanther:PTHR31251:SF3HOGENOM:HOG000082688InParanoid:Q700C2InterPro:IPR004333
InterPro:IPR020683iPTMnet:Q700C2KEGG:ath:AT1G76580OMA:RRNTKMAPaxDb:Q700C2Pfam:PF03110Pfam:Q700C2
Pfscan:PS51141PhylomeDB:Q700C2PIR:H96793PIR:T52568PRIDE:Q700C2PRO:PR:Q700C2PROSITE:PS51141
ProteinModelPortal:Q700C2Proteomes:UP000006548RefSeq:NP_177784.6SMR:Q700C2STRING:3702.AT1G76580.1SUPFAM:SSF103612SUPFAM:SSF48403
TAIR:AT1G76580TMHMM:TMhelixUniGene:At.21192UniGene:At.504UniProt:Q700C2
Coordinates (TAIR10) chr1:+:28734600..28738451
Molecular Weight (calculated) 109855.00 Da
IEP (calculated) 8.57
GRAVY (calculated) -0.51
Length 988 amino acids
Sequence (TAIR10)
(BLAST)
001: MGELPKDDWQ MNRWKWDGQR FEAIELQGES LQLSNKKGLD LNLPCGFNDV EGTPVDLTRP SKKVRSGSPG SGGGGGGNYP KCQVDNCKED LSIAKDYHRR
101: HKVCEVHSKA TKALVGKQMQ RFCQQCSRFH LLSEFDEGKR SCRRRLDGHN RRRRKTQPDA ITSQVVALEN RDNTSNNTNM DVMALLTALV CAQGRNEATT
201: NGSPGVPQRE QLLQILNKIK ALPLPMNLTS KLNNIGILAR KNPEQPSPMN PQNSMNGASS PSTMDLLAAL SASLGSSAPE AIAFLSQGGF GNKESNDRTK
301: LTSSDHSATT SLEKKTLEFP SFGGGERTSS TNHSPSQYSD SRGQDTRSSL SLQLFTSSPE EESRPKVASS TKYYSSASSN PVEDRSPSSS PVMQELFPLH
401: TSPETRRYNN YKDTSTSPRT SCLPLELFGA SNRGATANPN YNVLRHQSGY ASSGSDYSPP SLNSNAQERT GKISFKLFEK DPSQLPNTLR TEIFRWLSSF
501: PSDMESFIRP GCVILSVYVA MSASAWEQLE ENLLQRVRSL VQDSEFWSNS RFLVNAGRQL ASHKHGRIRL SKSWRTLNLP ELITVSPLAV VAGEETALIV
601: RGRNLTNDGM RLRCAHMGNY ASMEVTGREH RLTKVDELNV SSFQVQSASS VSLGRCFIEL ENGLRGDNFP LIIANATICK ELNRLEEEFH PKDVIEEQIQ
701: NLDRPRSREE VLCFLNELGW LFQRKWTSDI HGEPDFSLPR FKFLLVCSVE RDYCSLIRTV LDMMVERNLG KDGLLNKESL DMLADIQLLN RAIKRRNTKM
801: AETLIHYSVN PSTRNFIFLP SIAGPGDITP LHLAASTSSS DDMIDALTND PQEIGLSCWN TLVDATGQTP FSYAAMRDNH SYNTLVARKL ADKRNGQISL
901: NIENGIDQIG LSKRLSSELK RSCNTCASVA LKYQRKVSGS RRLFPTPIIH SMLAVATVCV CVCVFMHAFP MVRQGSHFSW GGLDYGSI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)