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AT1G76570.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Chlorophyll A-B binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Chlorophyll A-B binding family protein; FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to far red light, photosynthesis; LOCATED IN: light-harvesting complex, chloroplast, membrane; EXPRESSED IN: 28 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.3 (TAIR:AT3G27690.1); Has 2289 Blast hits to 2229 proteins in 217 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1997; Viruses - 0; Other Eukaryotes - 289 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IK11eggNOG:ENOG410YIPWEMBL:AC015450EMBL:CP002684EnsemblPlants:AT1G76570EnsemblPlants:AT1G76570.1entrez:843990
Gene3D:1.10.3460.10GeneID:843990GO:GO:0009522GO:GO:0009535GO:GO:0009637GO:GO:0009768GO:GO:0009941
GO:GO:0010218GO:GO:0010287GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0031409GO:GO:0046872
Gramene:AT1G76570.1hmmpanther:PTHR21649hmmpanther:PTHR21649:SF24HOGENOM:HOG000238032InterPro:IPR001344InterPro:IPR022796InterPro:IPR023329
KEGG:ath:AT1G76570KO:K14172ncoils:CoilOMA:AFHFVEPPANTHER:PTHR21649Pfam:PF00504PhylomeDB:Q9C9K1
PIR:G96793Proteomes:UP000006548RefSeq:NP_177783.1SMR:Q9C9K1STRING:3702.AT1G76570.1SUPFAM:0043399SUPFAM:SSF103511
TAIR:AT1G76570UniGene:At.34640UniProt:Q9C9K1
Coordinates (TAIR10) chr1:+:28729132..28730754
Molecular Weight (calculated) 36376.90 Da
IEP (calculated) 8.40
GRAVY (calculated) -0.04
Length 327 amino acids
Sequence (TAIR10)
(BLAST)
001: MALFQEKLSS LSSSYSSIHS LPRILVSKPR NRIAVTKSRS ICRASWQELA GVLVFSAIPF TAVKAIANSS IGVSLRRRLE EKKKEAVENS SRFKSKAQEA
101: RNDSKWYGKE RPRWFGPIPY DYPPYLTGEL PGDYGFDIAG LGKDRLTFDK YFNFEILHAR WAMLAALGAL IPEVFDLTGT FHFAEPVWWR VGYSKLQGET
201: LEYLGIPGLH VAGSQGVIVI AICQVLLMVG PEYARYCGIE ALEPLGIYLP GDINYPGGTL FDPLNLSEDP VAFEDLKVKE IKNGRLAMVA WLGFYAQAAF
301: TGKGPVQNLV DHVSDPLHNN LIAMLQT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)