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AT1G76500.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Predicted AT-hook DNA-binding family protein
Curator
Summary (TAIR10)
Encodes an AT hook domain containing protein. Identified in a screen of activation tagged lines that suppress the long-hypocotyl phenotype of a weak phyB allele. Affects cell elongation in the hypocotyl and leaves.Acts redundantly with ESC to modulate hypocotyl growth inhibition in response to light
Computational
Description (TAIR10)
SUPPRESSOR OF PHYB-4#3 (SOB3); FUNCTIONS IN: DNA binding; INVOLVED IN: photomorphogenesis; LOCATED IN: cellular_component unknown; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956), Predicted AT-hook DNA-binding (InterPro:IPR014476); BEST Arabidopsis thaliana protein match is: Predicted AT-hook DNA-binding family protein (TAIR:AT1G20900.1); Has 2179 Blast hits to 1721 proteins in 190 species: Archae - 0; Bacteria - 553; Metazoa - 266; Fungi - 109; Plants - 845; Viruses - 16; Other Eukaryotes - 390 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXDUeggNOG:ENOG410YHN4EMBL:AC015450EMBL:BR000365EMBL:BX817317EMBL:CP002684EnsemblPlants:AT1G76500
EnsemblPlants:AT1G76500.1entrez:843983GeneID:843983Genevisible:Q9C9K7GO:GO:0003680GO:GO:0005634GO:GO:0006351
GO:GO:0006355GO:GO:0009640GO:GO:0009908GO:GO:0010228GO:GO:0043621Gramene:AT1G76500.1hmmpanther:PTHR31100
hmmpanther:PTHR31100:SF5HOGENOM:HOG000239043InterPro:IPR005175InterPro:IPR014476KEGG:ath:AT1G76500ncoils:CoilOMA:DSNKDPG
PaxDb:Q9C9K7Pfam:PF03479Pfam:Q9C9K7Pfscan:PS51742PhylomeDB:Q9C9K7PIR:H96792PIRSF:PIRSF016021
PRIDE:Q9C9K7PRO:PR:Q9C9K7PROSITE:PS51742ProteinModelPortal:Q9C9K7Proteomes:UP000006548RefSeq:NP_177776.1SMR:Q9C9K7
STRING:3702.AT1G76500.1SUPFAM:SSF117856TAIR:AT1G76500tair10-symbols:AHL29tair10-symbols:SOB3UniGene:At.7934UniProt:Q9C9K7
Coordinates (TAIR10) chr1:+:28705532..28706440
Molecular Weight (calculated) 30616.60 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.48
Length 302 amino acids
Sequence (TAIR10)
(BLAST)
001: MDGGYDQSGG ASRYFHNLFR PELHHQLQPQ PQLHPLPQPQ PQPQPQQQNS DDESDSNKDP GSDPVTSGST GKRPRGRPPG SKNKPKPPVI VTRDSPNVLR
101: SHVLEVSSGA DIVESVTTYA RRRGRGVSIL SGNGTVANVS LRQPATTAAH GANGGTGGVV ALHGRFEILS LTGTVLPPPA PPGSGGLSIF LSGVQGQVIG
201: GNVVAPLVAS GPVILMAASF SNATFERLPL EDEGGEGGEG GEVGEGGGGE GGPPPATSSS PPSGAGQGQL RGNMSGYDQF AGDPHLLGWG AAAAAAPPRP
301: AF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)