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AT1G76420.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.947
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator
Summary (TAIR10)
Identified in an enhancer trap line; member of the NAC family of proteins. Expressed at the boundary between the shoot meristem and lateral organs and the polar nuclei in the embryo sac.
Computational
Description (TAIR10)
CUP SHAPED COTYLEDON3 (CUC3); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 38 (TAIR:AT2G24430.2); Has 3010 Blast hits to 3003 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3005; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Protein Annotations
BioGrid:29194DNASU:843975eggNOG:ENOG410IGFQeggNOG:ENOG410YDFUEMBL:AC012394EMBL:AC015450EMBL:AF543194
EMBL:CP002684EnsemblPlants:AT1G76420EnsemblPlants:AT1G76420.1entrez:843975GeneID:843975Genevisible:Q9S851GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0010014GO:GO:0010199Gramene:AT1G76420.1hmmpanther:PTHR31744
hmmpanther:PTHR31744:SF17HOGENOM:HOG000237406InParanoid:Q9S851InterPro:IPR003441iPTMnet:Q9S851KEGG:ath:AT1G76420OMA:GLKTKWV
PaxDb:Q9S851Pfam:PF02365Pfam:Q9S851Pfscan:PS51005PhylomeDB:Q9S851PIR:H96791PRO:PR:Q9S851
PROSITE:PS51005ProteinModelPortal:Q9S851Proteomes:UP000006548RefSeq:NP_177768.1SMR:Q9S851STRING:3702.AT1G76420.1SUPFAM:SSF101941
TAIR:AT1G76420tair10-symbols:ANAC031tair10-symbols:CUC3tair10-symbols:NAC368UniGene:At.52530UniProt:Q9S851
Coordinates (TAIR10) chr1:-:28672029..28673835
Molecular Weight (calculated) 38019.70 Da
IEP (calculated) 6.46
GRAVY (calculated) -0.62
Length 334 amino acids
Sequence (TAIR10)
(BLAST)
001: MMLAVEDVLS ELAGEERNER GLPPGFRFHP TDEELITFYL ASKIFHGGLS GIHISEVDLN RCEPWELPEM AKMGEREWYF YSLRDRKYPT GLRTNRATTA
101: GYWKATGKDK EVFSGGGGQL VGMKKTLVFY KGRAPRGLKT KWVMHEYRLE NDHSHRHTCK EEWVICRVFN KTGDRKNVGL IHNQISYLHN HSLSTTHHHH
201: HEALPLLIEP SNKTLTNFPS LLYDDPHQNY NNNNFLHGSS GHNIDELKAL INPVVSQLNG IIFPSGNNNN DEDDFDFNLG VKTEQSSNGN EIDVRDYLEN
301: PLFQEASYGL LGFSSSPGPL HMLLDSPCPL GFQL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)