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AT1G76400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25641898 (2015): plasma membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22923678 (2012): endoplasmic reticulum
  • PMID:22550958 (2012): plastid
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:16618929 (2006): endoplasmic reticulum
  • PMID:15295017 (2004): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribophorin I
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribophorin I; FUNCTIONS IN: oligosaccharyl transferase activity, dolichyl-diphosphooligosaccharide-protein glycotransferase activity; INVOLVED IN: protein amino acid glycosylation; LOCATED IN: endoplasmic reticulum, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribophorin I (InterPro:IPR007676); BEST Arabidopsis thaliana protein match is: Ribophorin I (TAIR:AT2G01720.1); Has 398 Blast hits to 398 proteins in 180 species: Archae - 2; Bacteria - 2; Metazoa - 149; Fungi - 127; Plants - 63; Viruses - 0; Other Eukaryotes - 55 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G76400-MONOMERBioGrid:29191EC:2.4.99.18eggNOG:ENOG410XQVZ
eggNOG:KOG2291EMBL:AC012394EMBL:AF083780EMBL:AY081297
EMBL:AY128779EMBL:AY139776EMBL:CP002684EnsemblPlants:AT1G76400
EnsemblPlants:AT1G76400.1entrez:843972GeneID:843972Genevisible:Q9SFX3
GO:GO:0004579GO:GO:0005783GO:GO:0005789GO:GO:0006486
GO:GO:0016020GO:GO:0016021Gramene:AT1G76400.1hmmpanther:PTHR21049
hmmpanther:PTHR21049:SF1HOGENOM:HOG000247000InParanoid:Q9SFX3InterPro:IPR007676
KEGG:00510+2.4.99.18KEGG:00513+2.4.99.18KEGG:ath:AT1G76400KO:K12666
ncoils:CoilOMA:LLIEPRFPANTHER:PTHR21049PaxDb:Q9SFX3
Pfam:PF04597Pfam:Q9SFX3PhylomeDB:Q9SFX3PIR:F96791
PRIDE:Q9SFX3PRO:PR:Q9SFX3ProteinModelPortal:Q9SFX3Proteomes:UP000006548
RefSeq:NP_177766.1STRING:3702.AT1G76400.1TAIR:AT1G76400TMHMM:TMhelix
UniGene:At.16778UniGene:At.66969UniPathway:UPA00378UniProt:Q9SFX3
Coordinates (TAIR10) chr1:-:28658713..28661672
Molecular Weight (calculated) 68645.90 Da
IEP (calculated) 8.81
GRAVY (calculated) -0.12
Length 614 amino acids
Sequence (TAIR10)
(BLAST)
001: MKQSSVVDLL LLLLAIALLA TPAFSDLVLS KVERRIDVTS QIARVTKTLK VVNSGSESVS EFALTFPKFL GNNLAYLSVA PSEGKGKSKR TLVNLSVREA
101: DQKGLPDSIS VYSVALPKPL SKGDTLTLEV VAAFTNVLQP FPEKITQGEI HLVMLQESAQ YLSPYAVESQ SLSIKLPNAR IESYTKFENT KLQGSELKYG
201: PYKNLQSYSY SPIVVHFESK AAFAVAEKLV REIEVSHWGN VQVTENYNVV HRGAQLKGEF SRLDFQARPN PRGASAFRHL LARLPPRAHS IYYRDDIGNI
301: STSEMKSDSK KTELLIEPRF PLFGGWKTFF TIGYGLPLTD FLFASEGKRF LNISFGSPIL DLVTEKLIVQ VVLPEGSKDI SVTTPFAVKQ SQEIKYSHLD
401: IAGRPVVVLE KNNVVPDHNQ HIQVYYKFSN INLLSEPLML ISGFFILFIT CIIYTRADIS ISKSSPSYLA KLQWDEVLAT LQEVQSIVQK CLATHDKLEA
501: SLRDLSRTGD IQTCKAARKS TDSLLKDLSK ELKPLLGFLQ SFPSASHISP KVEELVVKEK ELQEKLMAKH TTVVEGYEKK SSGRDIENRI ASQQQKIIAL
601: RQEIEDLLEF IDEI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)