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AT1G76250.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.952
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; Has 74 Blast hits to 74 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 69; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKG4eggNOG:ENOG4110PWBEMBL:AK118483EMBL:BT005371EMBL:CP002684EnsemblPlants:AT1G76250EnsemblPlants:AT1G76250.1
entrez:843958GeneID:843958Gramene:AT1G76250.1hmmpanther:PTHR35112KEGG:ath:AT1G76250ncoils:CoilOMA:YDWVVRT
Proteomes:UP000006548RefSeq:NP_177752.1STRING:3702.AT1G76250.1TAIR:AT1G76250TMHMM:TMhelixUniGene:At.34682UniProt:Q8GX25
Coordinates (TAIR10) chr1:-:28606561..28608942
Molecular Weight (calculated) 49070.20 Da
IEP (calculated) 6.74
GRAVY (calculated) -0.23
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MYVSRRISDV DRRLLLLLII PSLTLLVLIS FSSLSLDPFP TLAPLRNLIY THTLTVTDFT VELSDSNPND VIQAEEMENR RRRKREELVK SKIAVCLVGG
101: ARRFELTGPS IMEKILRVYP NADLFLNSPL DKNSFKLRLL KDAPRLAWVR IFEPKPINET EPMVRVLTPM NSPNGIKGLL QYFNLVEGCI TMIKAYQNEN
201: NFTYDWIVRT RVDGYWADPL DPEYFIPGQY LVPPGSSYGG LNDRFGVGDL NTSTVALSRL SLIPDLDSAG LTHLNSESAF KAQLTTQRVP YVTKPLPFCI
301: MTDRTYDFPP YRYGVPVAAL SSRGPLNGAK CRPCTVACNG SCVAEVMGKL NKEWSWTEWE NETVELCDAH GEWEKGWEKI FDETAGEKLA LARKRVGGLD
401: SRRCVEEFEN MRGMAVKWEA PASEQICTLG LRPN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)